Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0581 |
Symbol | |
ID | 3964988 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 718144 |
End bp | 720630 |
Gene Length | 2487 bp |
Protein Length | 828 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637919644 |
Product | transmembrane sensor-like domain-containing protein |
Protein accession | YP_526057 |
Protein GI | 90020230 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4252] Predicted transmembrane sensor domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0428324 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0128662 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGTAG CCTTCGATCG ATTCGTATTC GATTGGGCGC AACGCTTTGC CCCGCTTACC ATTGGCGACG ATATAGTCAT TATAGAAATA GACGATAAAA GCATTGCCCA ACTCGGGCGC TGGCCTTGGT CTCGCGACAC CCACGCGGCA TTGATTAATA CCCTGCACGC TGAAAACGCC AACACCATTG CCTTTGATAT TTTATTTGCA GATTACGATA AAACTAATCC ACAAGCCGAC CAAGCCTTTA CCAACGCCAT ACAACAGCAC GGTAACGTTA TACTGCCCCT GCACATTGAA AAATTAGGCA CCCAGGGGCA AATGCTAGAA GTGCTGCCGG CCAAATCGTT TGTAAAAGCG GCTGCGGGCT TAGGCCATGT ACACGTAGCG CAAGATAGCG ACGGCGTTAC CCGCAGCGTG TTTTTAAAAG AAGGGGTGGG CAACGCCTTT TGGCCGCACT TTTCGGTCAC CATTCACCAG CATTACGAAC AGCCCTTAGC AACATTGCCA GGCGAGCAAA ACCATCAGCA AAACATGCTC CCCGAACCCA ACACTATTGC GCGCGATTAC TTAAATTACA TTCCTGTAAC CACTAGCGCC CCCAACCTAA CGTATTTTTC TTATGCGGAT GTGCTTGCTC AAAACACCGC CAAAAATGCG TTTAACAACA AACTCGTTTT TATTGGAGCC ACGGCAACAG GCTTAGGCGA CGTGCTTACC ACCTCTGTTG GCGCTATGGC GGGTGTAGAA CTTAACGCGT GGATATACGA AGCCCTAAGG CAAGACAAAC TTATTCAGCA TGCAGGGCCA AGTGTTACTC TTGCTATAAA TTTATTGGCC ACATTTATTT TACTTATTAT TCTTGGCCGC CTTGCACCTA AAGCGCTACT GCTTGCAAGC TTAGCCTCTG TACTAGGCTT ACTAGGCCTA AGCATTGGTT TACAAAATTA CTTCAGTGTG TGGCTACCAC TTTCGCCAGC TTTATTTGCC CTGTGTATGT TTTACCCGCT ATGGAGCTGG TTGCGATTAG AAATAGCGGT AAAATTTTTA AAGAGCGAGC TACACCAATT AAATGAACAC CCCCATCAAC TTCAGTTTGA AATAAAACAA GCCGAAAGAG GCCTAAATTA TTTACAAGAT TTAGGCATTC TTAGCCGCTG GGAATCGAGC AAGCGCACGG AAGAAAAAAA CACCCCAGCC AATTTAACTA GTGCAGAAAA CGACGAGCAT GTATTTTTAT TGCACACAGA CACAGCCATT ATTCGCGCTT ATTTATCTAA GCAATACCTG CAAAAAATAC CCAGCGACTG GCAAATGGCA AAGCGCGCAC AGGCGCTATT CAATCGTTTT TATACTCGCA ACAACACCTC GCCATACGCT AAAGGCTCCG GCACTGAAGT TATATCGCAA ACCGTTGCGC AATTAAGCGC GGTAAAGCAA AGCGAAGAAA TTAGCCAGCG GTTACTGCAA CAAAGTTTAG CCAAACTACA GGACGGCGTA ATAATAGCCA ACATGTACGG TACAGTGCTG TTCGCAAACG ACGCCTTTAG CGCTATGACA GGCCGAACCG TAGACAGCAA CACCAACTTA ATGGATGCCA TCGGTCAACT TAGCCTAAAA GACAGCAATC AGTGGCGCCC GCTTATTGCT TCGCTCTATG CCGATAGAAA ATCCATTTCT GGCCAAGCGG CAAACACCAA TACCAATGTA GATTTATTCT TCCAAGCGCG CACAGAAAAT ATATACGGGG ACTTTGAAGA TACCATCATC ATTACCTTCA CCAACATTAC CGAAGTGCGC GCAGCAGAAA AAGCCAAAAT GGAAGCCCTT AATTTTCTCT CGCACGACTT ACGCGCCCCT ATGCTTTCGG TATTGGCGGT TATTGAACGT CACAAAACCA ATTGCGCCGA AGCTAATTTT GCCGAGCATC AAGCGTTTAC CACAATAGAA ACCTTAGTAC GACAAAACCT AAGCTACGCA GAAGACTTTT TACAGCTTAG CCGCGCGCAA ACACTCAAGG AATCACAATT CCACTTTTGC GACCTGCACG CTATTTTTGA CGGCGCCCAC AAAAACGCAC TGGCGTTGGC CCGAGCTAAA AACGTGAGTA TTCAAACGCA AAAAGCGGAC GTAGATGCTT GGGTAATGGG CGATCACACG CTACTAGAAC GCGCCCTAAC CAATATTATT ACCAACGCAA TTAAATACAG CCCTAAAAAT AGTTTTATTC AGCTGAACTT GGCGCAAGCA GGTAACCAGT TTGAAATTGC GGTACAAGAT AACGGCATTG GCATAAACAA CAAAGATTTA AAAACCATTT TCGAGCGCTT TAGCCGTGGT AAAAGCGGCA ACAAAGAACA CGGTGCAGGC CTTGGGTTAT ATTTTGCGGC ACTGGTAGCC AAGCAACATG CGGGCGACAT TGAAGTTGAA AGCGAGCTAG GTAAGGGCAG CGTATTTAAA CTAGTGCTGC CTGCCTGCGC GGAATAA
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Protein sequence | MTVAFDRFVF DWAQRFAPLT IGDDIVIIEI DDKSIAQLGR WPWSRDTHAA LINTLHAENA NTIAFDILFA DYDKTNPQAD QAFTNAIQQH GNVILPLHIE KLGTQGQMLE VLPAKSFVKA AAGLGHVHVA QDSDGVTRSV FLKEGVGNAF WPHFSVTIHQ HYEQPLATLP GEQNHQQNML PEPNTIARDY LNYIPVTTSA PNLTYFSYAD VLAQNTAKNA FNNKLVFIGA TATGLGDVLT TSVGAMAGVE LNAWIYEALR QDKLIQHAGP SVTLAINLLA TFILLIILGR LAPKALLLAS LASVLGLLGL SIGLQNYFSV WLPLSPALFA LCMFYPLWSW LRLEIAVKFL KSELHQLNEH PHQLQFEIKQ AERGLNYLQD LGILSRWESS KRTEEKNTPA NLTSAENDEH VFLLHTDTAI IRAYLSKQYL QKIPSDWQMA KRAQALFNRF YTRNNTSPYA KGSGTEVISQ TVAQLSAVKQ SEEISQRLLQ QSLAKLQDGV IIANMYGTVL FANDAFSAMT GRTVDSNTNL MDAIGQLSLK DSNQWRPLIA SLYADRKSIS GQAANTNTNV DLFFQARTEN IYGDFEDTII ITFTNITEVR AAEKAKMEAL NFLSHDLRAP MLSVLAVIER HKTNCAEANF AEHQAFTTIE TLVRQNLSYA EDFLQLSRAQ TLKESQFHFC DLHAIFDGAH KNALALARAK NVSIQTQKAD VDAWVMGDHT LLERALTNII TNAIKYSPKN SFIQLNLAQA GNQFEIAVQD NGIGINNKDL KTIFERFSRG KSGNKEHGAG LGLYFAALVA KQHAGDIEVE SELGKGSVFK LVLPACAE
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