Gene Sde_0581 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0581 
Symbol 
ID3964988 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp718144 
End bp720630 
Gene Length2487 bp 
Protein Length828 aa 
Translation table11 
GC content46% 
IMG OID637919644 
Producttransmembrane sensor-like domain-containing protein 
Protein accessionYP_526057 
Protein GI90020230 
COG category[T] Signal transduction mechanisms 
COG ID[COG4252] Predicted transmembrane sensor domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0428324 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0128662 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGTAG CCTTCGATCG ATTCGTATTC GATTGGGCGC AACGCTTTGC CCCGCTTACC 
ATTGGCGACG ATATAGTCAT TATAGAAATA GACGATAAAA GCATTGCCCA ACTCGGGCGC
TGGCCTTGGT CTCGCGACAC CCACGCGGCA TTGATTAATA CCCTGCACGC TGAAAACGCC
AACACCATTG CCTTTGATAT TTTATTTGCA GATTACGATA AAACTAATCC ACAAGCCGAC
CAAGCCTTTA CCAACGCCAT ACAACAGCAC GGTAACGTTA TACTGCCCCT GCACATTGAA
AAATTAGGCA CCCAGGGGCA AATGCTAGAA GTGCTGCCGG CCAAATCGTT TGTAAAAGCG
GCTGCGGGCT TAGGCCATGT ACACGTAGCG CAAGATAGCG ACGGCGTTAC CCGCAGCGTG
TTTTTAAAAG AAGGGGTGGG CAACGCCTTT TGGCCGCACT TTTCGGTCAC CATTCACCAG
CATTACGAAC AGCCCTTAGC AACATTGCCA GGCGAGCAAA ACCATCAGCA AAACATGCTC
CCCGAACCCA ACACTATTGC GCGCGATTAC TTAAATTACA TTCCTGTAAC CACTAGCGCC
CCCAACCTAA CGTATTTTTC TTATGCGGAT GTGCTTGCTC AAAACACCGC CAAAAATGCG
TTTAACAACA AACTCGTTTT TATTGGAGCC ACGGCAACAG GCTTAGGCGA CGTGCTTACC
ACCTCTGTTG GCGCTATGGC GGGTGTAGAA CTTAACGCGT GGATATACGA AGCCCTAAGG
CAAGACAAAC TTATTCAGCA TGCAGGGCCA AGTGTTACTC TTGCTATAAA TTTATTGGCC
ACATTTATTT TACTTATTAT TCTTGGCCGC CTTGCACCTA AAGCGCTACT GCTTGCAAGC
TTAGCCTCTG TACTAGGCTT ACTAGGCCTA AGCATTGGTT TACAAAATTA CTTCAGTGTG
TGGCTACCAC TTTCGCCAGC TTTATTTGCC CTGTGTATGT TTTACCCGCT ATGGAGCTGG
TTGCGATTAG AAATAGCGGT AAAATTTTTA AAGAGCGAGC TACACCAATT AAATGAACAC
CCCCATCAAC TTCAGTTTGA AATAAAACAA GCCGAAAGAG GCCTAAATTA TTTACAAGAT
TTAGGCATTC TTAGCCGCTG GGAATCGAGC AAGCGCACGG AAGAAAAAAA CACCCCAGCC
AATTTAACTA GTGCAGAAAA CGACGAGCAT GTATTTTTAT TGCACACAGA CACAGCCATT
ATTCGCGCTT ATTTATCTAA GCAATACCTG CAAAAAATAC CCAGCGACTG GCAAATGGCA
AAGCGCGCAC AGGCGCTATT CAATCGTTTT TATACTCGCA ACAACACCTC GCCATACGCT
AAAGGCTCCG GCACTGAAGT TATATCGCAA ACCGTTGCGC AATTAAGCGC GGTAAAGCAA
AGCGAAGAAA TTAGCCAGCG GTTACTGCAA CAAAGTTTAG CCAAACTACA GGACGGCGTA
ATAATAGCCA ACATGTACGG TACAGTGCTG TTCGCAAACG ACGCCTTTAG CGCTATGACA
GGCCGAACCG TAGACAGCAA CACCAACTTA ATGGATGCCA TCGGTCAACT TAGCCTAAAA
GACAGCAATC AGTGGCGCCC GCTTATTGCT TCGCTCTATG CCGATAGAAA ATCCATTTCT
GGCCAAGCGG CAAACACCAA TACCAATGTA GATTTATTCT TCCAAGCGCG CACAGAAAAT
ATATACGGGG ACTTTGAAGA TACCATCATC ATTACCTTCA CCAACATTAC CGAAGTGCGC
GCAGCAGAAA AAGCCAAAAT GGAAGCCCTT AATTTTCTCT CGCACGACTT ACGCGCCCCT
ATGCTTTCGG TATTGGCGGT TATTGAACGT CACAAAACCA ATTGCGCCGA AGCTAATTTT
GCCGAGCATC AAGCGTTTAC CACAATAGAA ACCTTAGTAC GACAAAACCT AAGCTACGCA
GAAGACTTTT TACAGCTTAG CCGCGCGCAA ACACTCAAGG AATCACAATT CCACTTTTGC
GACCTGCACG CTATTTTTGA CGGCGCCCAC AAAAACGCAC TGGCGTTGGC CCGAGCTAAA
AACGTGAGTA TTCAAACGCA AAAAGCGGAC GTAGATGCTT GGGTAATGGG CGATCACACG
CTACTAGAAC GCGCCCTAAC CAATATTATT ACCAACGCAA TTAAATACAG CCCTAAAAAT
AGTTTTATTC AGCTGAACTT GGCGCAAGCA GGTAACCAGT TTGAAATTGC GGTACAAGAT
AACGGCATTG GCATAAACAA CAAAGATTTA AAAACCATTT TCGAGCGCTT TAGCCGTGGT
AAAAGCGGCA ACAAAGAACA CGGTGCAGGC CTTGGGTTAT ATTTTGCGGC ACTGGTAGCC
AAGCAACATG CGGGCGACAT TGAAGTTGAA AGCGAGCTAG GTAAGGGCAG CGTATTTAAA
CTAGTGCTGC CTGCCTGCGC GGAATAA
 
Protein sequence
MTVAFDRFVF DWAQRFAPLT IGDDIVIIEI DDKSIAQLGR WPWSRDTHAA LINTLHAENA 
NTIAFDILFA DYDKTNPQAD QAFTNAIQQH GNVILPLHIE KLGTQGQMLE VLPAKSFVKA
AAGLGHVHVA QDSDGVTRSV FLKEGVGNAF WPHFSVTIHQ HYEQPLATLP GEQNHQQNML
PEPNTIARDY LNYIPVTTSA PNLTYFSYAD VLAQNTAKNA FNNKLVFIGA TATGLGDVLT
TSVGAMAGVE LNAWIYEALR QDKLIQHAGP SVTLAINLLA TFILLIILGR LAPKALLLAS
LASVLGLLGL SIGLQNYFSV WLPLSPALFA LCMFYPLWSW LRLEIAVKFL KSELHQLNEH
PHQLQFEIKQ AERGLNYLQD LGILSRWESS KRTEEKNTPA NLTSAENDEH VFLLHTDTAI
IRAYLSKQYL QKIPSDWQMA KRAQALFNRF YTRNNTSPYA KGSGTEVISQ TVAQLSAVKQ
SEEISQRLLQ QSLAKLQDGV IIANMYGTVL FANDAFSAMT GRTVDSNTNL MDAIGQLSLK
DSNQWRPLIA SLYADRKSIS GQAANTNTNV DLFFQARTEN IYGDFEDTII ITFTNITEVR
AAEKAKMEAL NFLSHDLRAP MLSVLAVIER HKTNCAEANF AEHQAFTTIE TLVRQNLSYA
EDFLQLSRAQ TLKESQFHFC DLHAIFDGAH KNALALARAK NVSIQTQKAD VDAWVMGDHT
LLERALTNII TNAIKYSPKN SFIQLNLAQA GNQFEIAVQD NGIGINNKDL KTIFERFSRG
KSGNKEHGAG LGLYFAALVA KQHAGDIEVE SELGKGSVFK LVLPACAE