| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0560 |
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| Symbol | |
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| ID | 3964851 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 687240 |
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| End bp | 691538 |
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| Gene Length | 4299 bp |
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| Protein Length | 1432 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637919623 |
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| Product | putative pullulanase precursor |
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| Protein accession | YP_526036 |
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| Protein GI | 90020209 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02103] alpha-1,6-glucosidases, pullulanase-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.594398 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCAA TAAGAAATAT GTTAAAGGTG TCGACCCTTA TACTACTGGC AGTCGGTTTG
TATGCCTGTG GTGGCGGTAG CACTGTAGAA AGCGGTAAAG AGCTGTTAAC GTGTTCTGTA
CCTCAAGTGC CAAACTCTGC GGGTACAGAG TGTGTAGATC CCGAGCCTAT TCAGTGCGCA
ATACCTACTG TACCTGATGA AAAAAATGAA ACATGTATTG TGGGTGCAAA CCCAGATGCG
CCAGACCCAA TTGTTTTCCC TGGCCCAAAC CAAGCCATCT TATTTTTCAA TAAGGCTGAT
GGCGATTACG AAGGTTATCG TTTACATAAC TGGAATAGTG AAACGTGTAA TGCGTATGCG
GAGGGTTCTC TAGCTGCGTC GTGGAGTAAT GGATTGGTTC ACTCTGGGGT AGACCCAGTA
TACGGCGCAT ACTGGTTGCT TGACCTAGTA GAAGGTCACG ACGACTGCGG TCACTTTATT
ATTCACGTTG GTACTGACGA TGCAGGTAAA GAAATGGGTG GTGGCGATTG GATTATGCCA
CTTGCGCAAG ACGACCCTAA ATTTACGCGC ATGAACTTTA CCTTCTCTGG TGTGGGTTCG
GTATTTGAAT TCCCTGTTCC AAGTTTAGGG CCACAAAAAG TTGCTATAGC AGGCGCTGCT
GCACACTGGT TAGATATAGA CACGCTAGTG TGGAACTTAG ATACCACTGA TGTTGCAGAT
GTTAAATTAC ATTACTCTGC AACTGCAGGC ATTACAGTAG ATGACGACTC TAACGTGTCA
GGCTCTACTG CAGACCTAAC GTTTGCTACC TTGTCTGAAG AGTTGCAACA GCTTGTGCCG
CATATGGCTA GCTGGCCGGC GTTTGGCAAT ATGTTAACCG CCAGCGATGT TAAGCCTATT
GTTAAAGGGC AGCTTATTGC TGTTGCATAC AATGCTGACG GTAAAGCCAT TGCCGCTACC
AAAGTACAGC GTGCACGTGT ACTTGATGCG CTTTATACCG CAGGCGAGAA CGATGCAGAC
GAAGCAACTT TAGGTGTTGT TTACGACGGT GCCAATATTA ACGTAAGCGT GTGGGCACCT
ACGGCTACCT CTGTAACGCT GCGCGTATTC GATGCGGCTA AAACAGAAGT TTCTAGTCAC
ACCATGAACG AAGATACCAG CACAGGTATT TGGAGCTTTG CTGGCGATAG CAATTTAGAT
CGCGTGTTTT ACCAGTTTGA GCTAAGCGTA TTCCATCCAC TTACTCAAGC AATCGAAACT
GTAACAACAT CCGACCCGTA CTCAGTAAGC CTATCTACTA ACGGTGAATA CTCACAGTTT
GTAAACCTAG CTGATGACGA TTTGCTGCCA GAAAATTGGA ACGGTCACAC AGTACCCACC
ATTGCAAACT TCGAAGATGC CGTAATTCTA GAAGCCCACA TACGTGACTT TAGTATTCGC
GACGAAACCG TGAGTGAAGC AAACCGTGGT AAGTACCTAG CCTTCACCGA AACAGAATCC
AACGCGGTTA AATATTTGCA GCGCATGGCA GAAAGTGGCG TTACCCACTT CCATATGTTG
CCAGCTAACG ATATTGCAAC TGTAAACGAA GATGAAAGTG AGCAAATTAA TTTAACCAGC
ACTGTGGCAG AGTTGTGTGC GGTGAAGGCC GACGCCCCTG TATGTGGTGA AGAAAGTGAT
AGTGCTACTT TAATTAGCGT TTTAGAAAGC TATCAGTATG AGCCACTGGC TGCTCAAGCA
CTTGTAGAGA GCATGCGTAG CCTAGATGGT TTCAACTGGG GGTATGATCC TCATCACTTT
AATGCACCTG AAGGTAGCTA TGCTTCCGAC CCTGATGGTG TAGCTCGCAT TAAAGAAATG
CGTGAAATGA ATAAGGCGCT TCACGACTTA GGTTTACGTG TAGTGTTAGA TGTTGTTTAT
AACCATACTT CAGCGTCTGG CCTTTGGGAT AACTCAGTAT TCGATAAAGT AGTGCCTGGT
TATTATCATC GTTATGATGA AAATAGCGGT GGTATTATCA CGTCGACTTG TTGTGACAAT
ACCGCGCCAG AAAACCGCAT GATGCATAAA TTTGTTGTGG ACTCCCTAGT ACTTTGGGCC
GAAGCATACA AGTTTGACGG TTTCCGCTTT GATATTATGG GGCACATTCC TAAGTCCACA
ATTTTGGAAG CGCGTGAAGC TGTATTGGCT GTTGACCCTA ACACTTACTT TTATGGTGAA
GGTTGGAACT GGGGTGAAGT AGAGAATAAC CGCCTCTTCG TTCAAGCAAC TCAAGCCAAC
ATGGCTGGCA CAGAAGTAGG TACATTTAAT GATCGTCCAC GCGATGATAT TCGTAGTGCA
GCGTTATTTA ATGAAGACGG CAGCTTAGAT GCTCAAGACC ATATTCGATT GGGCTTAGCA
GGTACACAGG CTGACTTTAT TCTAGAAAGT AATCGCGGCA ATATGGGCAC CGGTAGTACC
TATGCGCGCG CTTCCTACGG GTTAGATCCT GCCGACATTA TTAATTATGT GTCTAAGCAC
GATAACGAAA CCTTGTGGGA CCAATTGCAG TACGGCTTGC CAGAGTCAAT GAGCTTAGAA
GACCGTGTTC GCGCTCATAA TATTGCAGCT ACTATTCCTG TTATGAGCCA AGGTATACCT
TTCTTCCAGT TGGGCGTAGA TATGCTTCGC TCTAAATCTA TGGATAGAAA CGGTTACGAT
GCAGGTGATT GGTTCAACTT TGTTGACTAC ACCATGGCCT CGAACAACTG GGATGTAGGT
TTACCATTAG CGCAAGATAA CGAAGTTCGC TGGGAAGAAA TTGACGCAAT TAGCGGTCGC
ATTTCGGCGC CAGGTATGTT CGAACTGGAT TACAGCTCAC AAGTGTTCTC TGAATTTTTA
CAAATTCGTA AATCTAGTCC GCTATTCCGC TTAACAACTT CTGCAGACAT TATCGATCGT
GTTGGTTTCC ACAATATCGG TAATCGCCAG CAGCAAGGTT TAATTGTAAT GAGTATCGAC
GACGGGACAG GTCTTGCTGA TCTTGATCCG GCAAACGATG CTATTGTGGT TGTAATTAAC
GGCACTAACG AATCGCAATC TCATACTGTT GCTACTGCTG CTGGCTTCCA GTTGCATTCA
ATTCAGCAAT CATCTGTAGA TAGCGTTGTT GCTGGTTCAA CTTTTACTGC GGGTGAAGGC
GAAGGTACAT TTACTGTGCC AGCATTAACC ACTGCTGTAT TTGTGAAGCC ACAAGGCGAA
GCTCAAGGTG CTGGCTTGTC TGCTGACGTT ACTCAAGGCG CACCCGATGT TGTGCCCTTT
GGCGATACCG TTGTATATAT TCGTGGTGAT ATGAATACTT GGTCTACAGA CAACCCGCTT
ACCTATGCCG GTAATGGTGT GTATTCCACA ACTATCGCTT TAACTGGTGG TACCACCTAC
GGCTTCAAGT TTGCTGATGC TGAATGGGGT GCTTTAGGTG TTAACTTTGG TGGTGCAGAA
GGCGGCGACG GTGTAGTGAC CGAAGGCGTA GATAAAAATC TGTTTGCCAC AAATACAAAC
CTTTCGTTTA CACCAGCAGT AGATGCAACC TATGTCATTA CTTTTGACGC AAGTGACTCC
GCAGCACCGG TAGCCAATAT TGTTAACGAA GAGCCATACC CTGGTTCAAC AATATTGTTG
CGTGGCGATA TGAATAGTTG GGGGGAAACC GATGCATTCA CTTATGAAGG CGGTCGAATT
TATACCTTCG AAACTACATT AGATGCTGGT ACTTATGGCT TTAAAGTGGC AACTGGAGAC
TGGAACACTG TTAACTTTGG TGCGGCAGCG GAAGATGAAA ACGTTGTAAG CCTTGGCGAA
AATGTTTACT TAGGTTCTAC CAACTTCAAC TTAAGCTTAA CCTTAGCAGA ATCTACCGAG
TTGGTGTTCA TCTTCGATAT GACCAATTTG GATGAACCTA AGTTGCGGGT TATGAATAAG
GCTTTCTTTG GTGATACAGC TGTATATATT CGTGGTGATA TGAACAGCTG GGGTGCTACA
GATGAAGTGG CTTACGTAGG TGATGGCGCG TACGCCACAA CATTAACACT TGCAGTTGGT
AGTTACTCTT TCAAAGTGGC AGATGCCGAT TGGGCCGATG TAAACTTCGG GCCAACGTCT
GCCGAGGCTG CACCGATAGT ATTGGGTGCA ACAAATGCTA CTTTGTTTAA TTCACCTAAT
AACTTTAGCC TAACCGTAGA AACTGCTGGC GACTTCACTT TCACTGTTAC AGGCCCAGAT
GCTACCAACC CGAGCCTAAC CGTAACCGCC GCAAACTAA
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| Protein sequence | MNAIRNMLKV STLILLAVGL YACGGGSTVE SGKELLTCSV PQVPNSAGTE CVDPEPIQCA
IPTVPDEKNE TCIVGANPDA PDPIVFPGPN QAILFFNKAD GDYEGYRLHN WNSETCNAYA
EGSLAASWSN GLVHSGVDPV YGAYWLLDLV EGHDDCGHFI IHVGTDDAGK EMGGGDWIMP
LAQDDPKFTR MNFTFSGVGS VFEFPVPSLG PQKVAIAGAA AHWLDIDTLV WNLDTTDVAD
VKLHYSATAG ITVDDDSNVS GSTADLTFAT LSEELQQLVP HMASWPAFGN MLTASDVKPI
VKGQLIAVAY NADGKAIAAT KVQRARVLDA LYTAGENDAD EATLGVVYDG ANINVSVWAP
TATSVTLRVF DAAKTEVSSH TMNEDTSTGI WSFAGDSNLD RVFYQFELSV FHPLTQAIET
VTTSDPYSVS LSTNGEYSQF VNLADDDLLP ENWNGHTVPT IANFEDAVIL EAHIRDFSIR
DETVSEANRG KYLAFTETES NAVKYLQRMA ESGVTHFHML PANDIATVNE DESEQINLTS
TVAELCAVKA DAPVCGEESD SATLISVLES YQYEPLAAQA LVESMRSLDG FNWGYDPHHF
NAPEGSYASD PDGVARIKEM REMNKALHDL GLRVVLDVVY NHTSASGLWD NSVFDKVVPG
YYHRYDENSG GIITSTCCDN TAPENRMMHK FVVDSLVLWA EAYKFDGFRF DIMGHIPKST
ILEAREAVLA VDPNTYFYGE GWNWGEVENN RLFVQATQAN MAGTEVGTFN DRPRDDIRSA
ALFNEDGSLD AQDHIRLGLA GTQADFILES NRGNMGTGST YARASYGLDP ADIINYVSKH
DNETLWDQLQ YGLPESMSLE DRVRAHNIAA TIPVMSQGIP FFQLGVDMLR SKSMDRNGYD
AGDWFNFVDY TMASNNWDVG LPLAQDNEVR WEEIDAISGR ISAPGMFELD YSSQVFSEFL
QIRKSSPLFR LTTSADIIDR VGFHNIGNRQ QQGLIVMSID DGTGLADLDP ANDAIVVVIN
GTNESQSHTV ATAAGFQLHS IQQSSVDSVV AGSTFTAGEG EGTFTVPALT TAVFVKPQGE
AQGAGLSADV TQGAPDVVPF GDTVVYIRGD MNTWSTDNPL TYAGNGVYST TIALTGGTTY
GFKFADAEWG ALGVNFGGAE GGDGVVTEGV DKNLFATNTN LSFTPAVDAT YVITFDASDS
AAPVANIVNE EPYPGSTILL RGDMNSWGET DAFTYEGGRI YTFETTLDAG TYGFKVATGD
WNTVNFGAAA EDENVVSLGE NVYLGSTNFN LSLTLAESTE LVFIFDMTNL DEPKLRVMNK
AFFGDTAVYI RGDMNSWGAT DEVAYVGDGA YATTLTLAVG SYSFKVADAD WADVNFGPTS
AEAAPIVLGA TNATLFNSPN NFSLTVETAG DFTFTVTGPD ATNPSLTVTA AN
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