| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0333 |
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| Symbol | |
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| ID | 3966513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 416748 |
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| End bp | 417725 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637919395 |
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| Product | Type I secretion outer membrane protein, TolC |
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| Protein accession | YP_525809 |
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| Protein GI | 90019982 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0672756 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAAAC CAAGGAAAAT GCAGGTTTCT TTAGATGCCA CACCATATTA TCACTGTACT
TCACGCTGTG TACGCAGGGC CTTTTTATGT GGCTTTGATA CGGTAACCAA CAAAGATTAC
GAACATCGTC GCCAATGGGT TGAAGATCGC ATTCATTTAT TAGCCGAGGT ATTTTGTGTT
GATGTATGCG CCTATGCGGT GATGTCTAAT CATTTACATC TCGTGCTGCA TATCAATCAG
CACAAAGCCT CAACGTTATC AGACTTGGAG GTGTGCCAGC GCTGGCACCG ACTGTATAAG
GGTACTTTGC TCACCCAACA GTTTGAGCAG GGCAAAGCAC TTACCCAAGC CGAGCTTGAG
GCTGTAAAAG CTAGAATAGA AGTATGGCGC GCGCAGCTGC ACGATATTAG CTGGTTTATG
CGGGCACTTA ACGAGCCGAT TGCGCGCATG GCCAACGCAG AAGATAACTG CACGGGGAGC
TTTTGGGAAT CGCGCTTTAC TTCGCAGGCG CTATTGGATG AAAAAGCACT AGCAGCATGT
ATGGCTTACG TAGACTTAAA CCCAGTGCGC GCCAAAATGG CCGCTACGCC AGAGGATTCG
GAGCATACTT CTATCAAGCT ACGTGTAGCG CAGGTAAAAA ATAAAAAACA ACAACCTACC
ACCCTATACC CATTTGTAGG CAACCCACGC CAACCTATGC CCGAAGGCTT ACCATTTAAA
CTGGCCGATT ATTTAGAGCT AGTTGATTGG ACTGGTCGAG TAATTCGCGC AAATAAACGC
GGCGCCATTA ATGCAGATTT ACCCTCTATC TTAAGCCGAA TAGAGTTACC CATCACAGAA
TGGTTAACTC TTGCGACCCA ATTTGAGCAG AGTGTTTCCA CGTTTGCTGG TTCCGAGCGT
GCCATCCGGT TAGCAGCTGA GGTACTAGGG TATAAAAAAA CTCCCGGCGT AGGGTTAGCT
AGACGGTTAT TTGCTTAG
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| Protein sequence | MPKPRKMQVS LDATPYYHCT SRCVRRAFLC GFDTVTNKDY EHRRQWVEDR IHLLAEVFCV
DVCAYAVMSN HLHLVLHINQ HKASTLSDLE VCQRWHRLYK GTLLTQQFEQ GKALTQAELE
AVKARIEVWR AQLHDISWFM RALNEPIARM ANAEDNCTGS FWESRFTSQA LLDEKALAAC
MAYVDLNPVR AKMAATPEDS EHTSIKLRVA QVKNKKQQPT TLYPFVGNPR QPMPEGLPFK
LADYLELVDW TGRVIRANKR GAINADLPSI LSRIELPITE WLTLATQFEQ SVSTFAGSER
AIRLAAEVLG YKKTPGVGLA RRLFA
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