Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0323 |
Symbol | |
ID | 3968591 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 401230 |
End bp | 403242 |
Gene Length | 2013 bp |
Protein Length | 670 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637919385 |
Product | TonB-like |
Protein accession | YP_525799 |
Protein GI | 90019972 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3693] Beta-1,4-xylanase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000000416946 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.597274 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCATAA TAACTATGAA AGCCGGTTTA CTTCTACGCA TCCTATTAAC TGTACTCGCG CTCAATATGC TTGCCGCATG TGGCGGTAGT TCTAGCAATA CCAAAGAACC CGTTACCCAG CCGGAACCAG AGCCAGAGCA GCAGCCAGAA CCAGAACCAG AGCCAGAGCC AGAGCCAGAG CCAGAACCAG AGCCAGAACC AGAGCCAGAA CCAGAGCCAG AGCCTGAAAT GGAACCGCAG CCAGAGCCAC AAGCGCCGCC TGCAGGTGGT GTATCTATCA TTGATACCAA CCCCAACAAT GCATCGTTTT GGGCAGGCTC AAACAATGGT GATGTGGGCA GTAGGGCTGT TATAGATGTC GATCACCCCG AATTTAGCCA AGCGACGCGC ATAACCGTAA GCAACCCCGC TAGCGACTAT TGGAATGGTC AGCTCTCCTT CCCGCTTAAT GCGAGTGTGG CGGCGGGGGA TGTAGTATTA GTGCGTTTGT ACATGCGCTC GGTGGAGAAT ACTTACGAAT CGGGTGCTAG TTTTACTACC GTATTTATTG AAGACAACAT CGACTTTACT AAATTTTTAA ACCGCGAAAT AACCGCCGCG CAAGATTGGG TAGAGTATTA CCTACCCGCA GAAATTACCG ATAACCATGC AACCGGTGAA GTGGGCTTGC GCATTGGCTT TGGCGCTGGC CCTAGGGCGC AGGTGTTTGA TATTGGCGGT GTAGAGCTAT TGCATTACAC CAATACTGAT ATAAGCGCTA TGCCTAGTAC ACGCCCAAGT TACGAAGGCC GCGAGCCAGA TGCCGCATGG CGTACAGCGG CGGCAGAGCG AATTGAGCAG CACCGCAAAG GCGACTTTGA GCTAACAGTA GTGGACGATG GCAACCCTAT CGCCAATGCC ACCATAGATG TAGATTTTCA AAAACACGCC TATCATTTTG GCTCGGTAAC TGTTGGCCAT CTATTGATGG GCACCAGTGA AGATAGCGCC ATTTACCGCG AAAAAGTGCT CGAGCTATTT AACCAAAGTG GCCCAGAAAA CGATTTAAAG TGGGGCCCAT GGGAAGGCGA GTGGGGCAAC AATTTTAACC AAACTCAAAC CCTAAACGGC TTGCAGTGGC TGCGCGATAA CGGCCTGTAC ACACGTGGCC ATGTAATGGT TTGGCCTTCT AAGCGCAACT TGCCAAACTT AATGCAGCAA TATTTACCAG AAGGCGACCC CGCCAGCGCC AACCCAGAAG CAAAACAAGT GGTGCTGGAT CACATCGATG ATATAGCAAC CGCAACAGCT AATTATTTAG ATGAGTGGGA TGTACTAAAC GAGCCTTACG ACAACCACTA TTTAATGGAT GCCTTTGGCG ATAGTGTAAT GGTGGATTGG TTTAATCGCG CGCGTACTAA CCTGCCTGCG CACGGTTTGT ACATAAACGA TTACAGTATT TTATCTGCGG GCGGGCGCAA TTTTGCTCAC CAAGAACACT ACACCAACAC GATTCAATAT TTGGTCGATA ACAACGCACC CATCACCGGT ATAGGTTTGC AAAGTCACTT TGGCGACTCG CCTACAGCCA TTACGCGTAT TTACGAAATT ATTGATCAAT ACAGTACCGC GTTTCCGCAG TTAGATATTC GCGCAACGGA ATTTGACGTA AGTACAACAG ATGAAGACCT GCAGGCAGAT TTTACCCGCG ACTTCTTAAC GATATTCTTT AGCCACCCTA AAACAGTGGG TGTGCAGTTG TGGGGTTTTT GGGCAAATGC ACATTGGTAC CCTAATGCAG CGCTTTATGA TGCCGATTGG CGAGAAAAGC CCAATGCACT AGCTTGGAAA GAGCAAATTT TTAACGAGTG GTGGAACGAC TTTGACGGCA CGACCAACGC ACAGGGTAAA TTTGATGAAC GCGGTTTTTA CGGCGATTAC CAAGTAACTG TAACCGTAGG TGAAGAGCAG CAAATTTTTA CCTTTAGCCT AGTTAAAGGC GGCGAACAAA ACTTTAGTTT TGAGTGGCAA TAG
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Protein sequence | MVIITMKAGL LLRILLTVLA LNMLAACGGS SSNTKEPVTQ PEPEPEQQPE PEPEPEPEPE PEPEPEPEPE PEPEPEMEPQ PEPQAPPAGG VSIIDTNPNN ASFWAGSNNG DVGSRAVIDV DHPEFSQATR ITVSNPASDY WNGQLSFPLN ASVAAGDVVL VRLYMRSVEN TYESGASFTT VFIEDNIDFT KFLNREITAA QDWVEYYLPA EITDNHATGE VGLRIGFGAG PRAQVFDIGG VELLHYTNTD ISAMPSTRPS YEGREPDAAW RTAAAERIEQ HRKGDFELTV VDDGNPIANA TIDVDFQKHA YHFGSVTVGH LLMGTSEDSA IYREKVLELF NQSGPENDLK WGPWEGEWGN NFNQTQTLNG LQWLRDNGLY TRGHVMVWPS KRNLPNLMQQ YLPEGDPASA NPEAKQVVLD HIDDIATATA NYLDEWDVLN EPYDNHYLMD AFGDSVMVDW FNRARTNLPA HGLYINDYSI LSAGGRNFAH QEHYTNTIQY LVDNNAPITG IGLQSHFGDS PTAITRIYEI IDQYSTAFPQ LDIRATEFDV STTDEDLQAD FTRDFLTIFF SHPKTVGVQL WGFWANAHWY PNAALYDADW REKPNALAWK EQIFNEWWND FDGTTNAQGK FDERGFYGDY QVTVTVGEEQ QIFTFSLVKG GEQNFSFEWQ
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