| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0238 |
|---|
| Symbol | |
|---|
| ID | 3968080 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 297194 |
|---|
| End bp | 298438 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637919298 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_525714 |
|---|
| Protein GI | 90019887 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.24058 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGACT TTCACTATCA AAACGGCGAA CTGTTCGCCG AGCAGTGCTC TCTTAATGCC
ATCGCCGACG CATTGGGCAC CCCTTGCTAT GTATACAGCA AAGCCGCCTT TACCCGTGCC
TATCAGGATT ACGCCAACGC CCTTGGCAAT CACCCAGGCA TGGTGTGCTA CGCAGTAAAA
GCCAACTCGA ACATTGCAGT GCTGCAAGTA TTGGCAAAGC TAGGTGCAGG TTTTGATATT
GTGTCGTCTG GCGAATTGCG CCGCGTGCTT AAAGCCGGTG GCCAACCTAA CCGTATTATT
TTTTCTGGGG TTGGTAAAAC CCGTGAAGAA ATGCGCGAAG CATTAGAAGT AGGTATTGCC
TGCTTTAACG TAGAATCGGA AGCAGAGCTT GAGCGCTTGG CAGACGTGGC CGCCGAACTG
GGCGTAGTTG CCTCTATTTC TTTACGCGTT AACCCAGATG TAGACGCCAA GACTCACCCG
TATATTTCTA CCGGCTTAAA AGAAAACAAA TTCGGGATAG ATATACAGCG CGCACCTGCG
GTGTACGCTC GCGCAAGCGA ACTCGCCAGC CTTAAGGTTG TGGGTGTAGA TTGCCACATA
GGGTCGCAGC TTACCGAGCT TACCCCGTTC TTAGACGCGT TAGACCGTTT GCTTCAACTG
GTAGATACCC TAGCCGAAAC AGGCATCACC ATTGAGCACT TAGACATAGG CGGCGGCTTG
GGCGTAACCT ATCGCGACGA AGTGCCCCCT GCAGTAGCCG ACTACTTAAC GCAAATTAAA
GCCAAGTTGG GTGATCGCAA ATTAGCCATT ATTATGGAAC CGGGCCGCTC TATTGCCGCC
AATGCCGGCG TAATGCTTAC CGAAGTTGAG TTTTTAAAGC CCACCGAGCA TAAAAACTTT
GCCATTATCG ACGGTGCCAT GAACGACAAT ATCCGCCCTG CGCTTTATCA AGCTTGGCAG
GACGTAAAAC CACTAAGCCA GCGCGAAGGC GAAACCCAAC AGTGGGATTT AGTAGGCCCA
GTGTGTGAAA CCGGCGACTT TTTAGCAAAA GACCGCGCAT TAGCATTGCA AGCTGGCGAC
CGTTTAGCGT TAATGTCTAG CGGCGCTTAC GGGTTTGTAA TGAGCTCTAA CTACAACACC
CGCGGCCGCG CAGCGGAAGT ACTTGTCGAT GGCGACAAAT ACTTTGTAGT GCGCGAGCGC
GAAAGCTTTG AGGATTTAAT TCGAGGCGAA CATTTATTAC CCTAA
|
|---|
| Protein sequence | MSDFHYQNGE LFAEQCSLNA IADALGTPCY VYSKAAFTRA YQDYANALGN HPGMVCYAVK
ANSNIAVLQV LAKLGAGFDI VSSGELRRVL KAGGQPNRII FSGVGKTREE MREALEVGIA
CFNVESEAEL ERLADVAAEL GVVASISLRV NPDVDAKTHP YISTGLKENK FGIDIQRAPA
VYARASELAS LKVVGVDCHI GSQLTELTPF LDALDRLLQL VDTLAETGIT IEHLDIGGGL
GVTYRDEVPP AVADYLTQIK AKLGDRKLAI IMEPGRSIAA NAGVMLTEVE FLKPTEHKNF
AIIDGAMNDN IRPALYQAWQ DVKPLSQREG ETQQWDLVGP VCETGDFLAK DRALALQAGD
RLALMSSGAY GFVMSSNYNT RGRAAEVLVD GDKYFVVRER ESFEDLIRGE HLLP
|
|---|
| |