Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0123 |
Symbol | |
ID | 3967577 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 155086 |
End bp | 155820 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637919182 |
Product | sortase (surface protein transpeptidase)-like |
Protein accession | YP_525599 |
Protein GI | 90019772 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3764] Sortase (surface protein transpeptidase) |
TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.592516 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTATGG TGGATTGGCG AGCAATTAAA CAAAAGTGGT TGTGGGGTTT GGTAATAGTG GGGCTGTTAT TGTGCGGCAA CAGCATGTGG GTACACGCAA AGGCCACACT CGCGCAGCAC CTTATTGCCA GCGCGTGGCA GCAAAGCTTG GCCGACGGCA AACCCCACAA GCCGTGGCGC TGGGCAGACT CGTGGCCAGT GGCGCGCTTA AAAGTACCCG CCACAGGGGC AGACCTTTAC GTATTGGCCG GCGCCCACGG CACAGCCCTC GCATTTGGCC CGGGCCATAT GGATGGCACC GCGTTGCCGG GTGCCAGTGG CACCAGCGTA GTAGGCGGCC ATCGCGATAC CCATTTTCAG TTTTTGCAAA ATCTGCAGGC GGGCGATTGG GTGCTGGTGC AACAACCCAA CGCCAAGTGG CATTCGTATC AAATTCAAAC CCAGCGCATT GCCGATATTC GCAAAGGCGG GTTAACCCTG CCCGCGCAAG GCGACTGGCT TTACTTGGTA ACCTGTTACC CGTTTAACAA TTGGAAGGCC GGTGGCAGCG AGCGCTATGT AGTAGAAGCC CGCCGCGTAC AGGCAAACCA AATAAGCGGC AAAACAGCCG AAGCTGATGC CAACCAGCCC ACAACACCTA CACAGGTTCC GGCGCAACTG AATGTGCTTA CTAAATGGCA AACGGGGTAT TACAGCAGTC GCGTGGATGC TAGGTTGGCA AGTGCTCACT TTTAA
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Protein sequence | MVMVDWRAIK QKWLWGLVIV GLLLCGNSMW VHAKATLAQH LIASAWQQSL ADGKPHKPWR WADSWPVARL KVPATGADLY VLAGAHGTAL AFGPGHMDGT ALPGASGTSV VGGHRDTHFQ FLQNLQAGDW VLVQQPNAKW HSYQIQTQRI ADIRKGGLTL PAQGDWLYLV TCYPFNNWKA GGSERYVVEA RRVQANQISG KTAEADANQP TTPTQVPAQL NVLTKWQTGY YSSRVDARLA SAHF
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