| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0074 |
|---|
| Symbol | |
|---|
| ID | 3967158 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 95014 |
|---|
| End bp | 95568 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637919133 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_525550 |
|---|
| Protein GI | 90019723 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02595] PEP-CTERM putative exosortase interaction domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.450755 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAACA AATTCACTAA AACTGTCGCC GCTTCAGCTC TACTAGGTCT TTCAATCACA
GCTAATGCAG GATTGTTTGA GTTCTCGTAT CTTTTTCAAG ACGGGTCTTC TGTAACGGGC
TCATTAACAG GCGATGCCAA TGGCTTATAC ATTGAGAATG TAGATAATGT ATCGGTTCAA
TTTAATGGCG TAGAGCTAAG CACGCAACTT TGGGATGTTG CATTTGTGCC AAGCGGAACA
GGTGTAAATG GTGACTGGTG GGACAACCGC ATAGATGGCA TAGTTTCTTT TGACGCCAGC
CTAAACAATT TCTTGTTTAT TAATTCCGAC TATCCAACAG ATTATAATTT CTCTGCCTAC
TTTTATATGA TTAACGACAA TGGCTATAAC AATGCTGTTG TGTACAACAC TTCTAACTCA
GCATCTGACG GTCCAATCAA TAGCAATGCA TGGTCTATTG CAGAAGTGAG CGTTCCAGAG
CCTGGCACAC TTGGCCTATT GGGCTTGGGG TTACTCGGTG TAGTCGCTTC ACGTCGTAAA
CTGAACAAAG CGTAA
|
|---|
| Protein sequence | MLNKFTKTVA ASALLGLSIT ANAGLFEFSY LFQDGSSVTG SLTGDANGLY IENVDNVSVQ
FNGVELSTQL WDVAFVPSGT GVNGDWWDNR IDGIVSFDAS LNNFLFINSD YPTDYNFSAY
FYMINDNGYN NAVVYNTSNS ASDGPINSNA WSIAEVSVPE PGTLGLLGLG LLGVVASRRK
LNKA
|
|---|
| |