| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0063 |
|---|
| Symbol | |
|---|
| ID | 3967147 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 77167 |
|---|
| End bp | 78501 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637919122 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_525539 |
|---|
| Protein GI | 90019712 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.000187215 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCATC ACTACAAATT GATACTTCCC CTCACAATAG CCGCACTCGC TAGTGCCTGT
GGTAGTGGTG GCGATGACGG GGGCGATAGC TCTGGTGGAA GTAGCAGTAA ATACGTTTAC
ATGAGTACTT ATTCCTCCGA GGTTGGTCGT TTTGTAGACA GTGCCGTTGG CGGCGTAGAA
TATTGTCAGG TGCTATTTAA TGTTCGTAAC TTAGACGATT CCATTGATGC TGAACGTATT
GATCAATGTG GAATTACCGA TTCCGATGGC AGCTTTAGCT ATACCCTAAG TGTGCAGGGT
ACTGAAGATC TGATTAACCC CGTGCTAGAT GGCGACGGCT TACAAGGGCG CCAATCGGCA
ATTATTGATT CAGCTATTCG CTTTAATGTG CGCGGTATTC AATTGCCCGA TGTACCTGTC
GACCAACTTA TTACACCCCT GAGCTTTTCT GCAGATAACA GCCTAGATCA GACTGCTATC
AATGTGGCTA GGCTTTTGGT ATCGCTGGAT AGCAATAACA ACCTAGAAGA CGGAATTTAT
ATTTCTGGCG ACGACTTTTC CAATAATATT TTAGATTTTG GTGCGGACTC TGAAGTGTTT
GCAACAGCCG CACAAGTAAC CTTAAACGAA GCCGAGCTAA CCCTTGCCGC CGAAGATGAA
GTGATTACGC ATGTTAATGA ATCGCTATCA AACCTAACGC AACTTGCCGG TACATGGGTG
TTTGCTAATA ACAGTCAACA GAGTTTTGTA CAGGTGAGTT TGTTTAGCGA TGGTACCTAC
ACCCATATAG AAAAAGGCGA CGAAATCGAC CCGTCGGGCA TGGAGTGGGG TAGTTATACC
CTAAACAATG GCGAGATAAC CTTTAAAGCC TACACCGATA ACAATGGCGC TATTGGTTTA
ATCGATTCAC CACTAGGGTC AACACTTACC ACGCCCACCA CACTGGGCTA TAGCTTAAGC
GAAGATACAA ACACACTCAC TTTAGTGGAC GGTAACGAGA GCTTTGATTT AGTGCGCGCA
GCCAATATAA CCGACTCGAT AGTAGGTACT TGGAAGCCAA AGTATAAAAC TCGCGCCTAT
TACATAAGCC TAAGTTTTTT TGAAAATGGC CTTTATAGTC ACGGTGAGCT CGGTGACGCG
GATGAACCAG ACGGAATAGA AATAGGCCAA TACGATTTGA ACAGCTCCAC TGGTCGATTA
ATACCTACAT TGTATGTAGA CACTAACGGT TCGACAGGTT TAAGTGATGC TGTTAACGAA
GGTGAAGTGC TAACAGTAGA AGTGAACGGA GATGAGCTTA CCTTTAACGG TGAGATGGTT
TTTGTTCGCC AATAA
|
|---|
| Protein sequence | MQHHYKLILP LTIAALASAC GSGGDDGGDS SGGSSSKYVY MSTYSSEVGR FVDSAVGGVE
YCQVLFNVRN LDDSIDAERI DQCGITDSDG SFSYTLSVQG TEDLINPVLD GDGLQGRQSA
IIDSAIRFNV RGIQLPDVPV DQLITPLSFS ADNSLDQTAI NVARLLVSLD SNNNLEDGIY
ISGDDFSNNI LDFGADSEVF ATAAQVTLNE AELTLAAEDE VITHVNESLS NLTQLAGTWV
FANNSQQSFV QVSLFSDGTY THIEKGDEID PSGMEWGSYT LNNGEITFKA YTDNNGAIGL
IDSPLGSTLT TPTTLGYSLS EDTNTLTLVD GNESFDLVRA ANITDSIVGT WKPKYKTRAY
YISLSFFENG LYSHGELGDA DEPDGIEIGQ YDLNSSTGRL IPTLYVDTNG STGLSDAVNE
GEVLTVEVNG DELTFNGEMV FVRQ
|
|---|
| |