Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0043 |
Symbol | |
ID | 3965351 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 48155 |
End bp | 49339 |
Gene Length | 1185 bp |
Protein Length | 394 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637919102 |
Product | putative cytochrome oxidase assembly protein |
Protein accession | YP_525519 |
Protein GI | 90019692 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1612] Uncharacterized protein required for cytochrome oxidase assembly |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.484274 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAATA AAAAGCTCGT GTACCGTCTT TCTTGCTTGG CCTTTGCGGT TGCCGCAGTA GTGGTATTGT TGGGTGCATT TACACGCTTG GTGGATGCGG GTTTAGGCTG CCCAGATTGG CCTACGTGTT ACGGCCATGT ATGGGTGCCC ACCAGCGAAG CCGATATTGC AAAAGCTAAC GAAAACTTTA GTCATGCACC GGTAGAAACC CACAAAACCT GGCCAGAGCA AATTCACAGA ATATTTGCCT CAAGCTTAGG GCTAATAATT TTGGGTATTT TCGCTGTAGC ACTGGTTGGT AGAAATGAAA AAACGCCGTG GCGCTCGGTA GTATTGCTCT TAGGTGTATT GGTAGCAGGT ACGGTGGGTA GAGTAATAAT AGGCGATAAG CTCGACCCAC TTTTACTGTT ATTTGTTGCG TGTTATTTTT TAAACCTGTG CCGCCTAAAT TGGATGCAAC CTACAGCGAG CAACACCTCT AGCATGCCTT TTAAATTACC GGCACTGCTC GCGGGGCTGG TTATATTACA GGGCCTGTTT GGTATGTGGA CGGTAACCCT CAATCTTTGG CCACAAGTTG TAACGGCGCA CCTATTGGGT GGCTTCACTA CTCTGGCATT CATTTGGCTG CTTATTCAGC GTTGCGGCAA TTACACTTGG CAGCTTAACA GCGCGGTATT AAGTGAATTA AACACCATTA AGGTATTGGC TTTAATAGGT TTGGTTGTTG TGGCATTGCA AATAGCGCTA GGTGGTTGGA CAACCTCAAA CTATGCGGCG CTAGCCTGTG CGGACTTTCC CAAGTGCCAT AACACTTGGT TACCCGAAAC TGACTTCGCC CAAGGCTTTA ATTTTTTACA GCATGTAGGG CCAAACTATT TAGGTGGCGT AATGGACAAT GCCGCTCGCA CGGCGATCCA TTTTAGCCAT AGGTTAGGCG CCCTGTTAAC GTTTGTGGTT ATGGCCTTAT TAGCCTTTAG ATTATTTCGG GTAGAGTCAC CACTGGCTAA GCGATGGGCT GTAATAGTCA TTTCGGGTAC GCTTTTACAA GTAGCGTTGG GCATAAGTAA CGTTGTTTTT GCGCTACCAC TAGCCATCGC CGTCGCCCAT AACGCAGGTG GTGCAGCTTT ACTGCTAATA CTGGTAACCT TGAACCACAG GTTGCGCACG GCGAAGGCCA GCTAA
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Protein sequence | MKNKKLVYRL SCLAFAVAAV VVLLGAFTRL VDAGLGCPDW PTCYGHVWVP TSEADIAKAN ENFSHAPVET HKTWPEQIHR IFASSLGLII LGIFAVALVG RNEKTPWRSV VLLLGVLVAG TVGRVIIGDK LDPLLLLFVA CYFLNLCRLN WMQPTASNTS SMPFKLPALL AGLVILQGLF GMWTVTLNLW PQVVTAHLLG GFTTLAFIWL LIQRCGNYTW QLNSAVLSEL NTIKVLALIG LVVVALQIAL GGWTTSNYAA LACADFPKCH NTWLPETDFA QGFNFLQHVG PNYLGGVMDN AARTAIHFSH RLGALLTFVV MALLAFRLFR VESPLAKRWA VIVISGTLLQ VALGISNVVF ALPLAIAVAH NAGGAALLLI LVTLNHRLRT AKAS
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