| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0037 |
|---|
| Symbol | |
|---|
| ID | 3968170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 43193 |
|---|
| End bp | 44743 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637919096 |
|---|
| Product | cytochrome-c oxidase |
|---|
| Protein accession | YP_525513 |
|---|
| Protein GI | 90019686 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
|---|
| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.857978 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACATG GTCCTGCGAA AGGTCTGAGT CGTTGGTTTT TTACAACCAA CCATAAAGAT
ATCGGTAGCA TGTATTTGTG GTTCAGTTTC GCCATGTTCT TTCTTGGCGG TATTTTCGCG
TTAGTTATTC GTGCGGAACT GTTCCAACCC GGCCTACAAA TTGTAGAGCC AAACTTCTTT
AACCAAATGA CCACCATGCA CGGCTTGGTG ATGGTGTTTG GTGCGGTAAT GCCCGCGTTT
GTGGGCTTGG CCAACTGGAT GATACCAATG ATGATTGGTG CACCCGATAT GGCCCTGCCG
CGTATGAACA ACTGGAGCTT CTGGATTCTT CCATTTGCGT TCGCCCTGTT GGCGTCCACG
TTGTTTATGG CTGGCGGCGC GCCCAACTTC GGTTGGACAT TCTACGCACC GCTTTCTACT
ACCTATGCCC CAGCGTCGGT GACGTTCTTT ATCTTCGCCG TACACATTAT GGGTGCAAGC
TCTATCATGG GTTCCATCAA CATCATCGCC ACTATTCTTA ACATGCGTGC CCCAGGCATG
ACGTTAATGA AAATGCCGCT GTTTGTATGG ACATGGTTAA TTACCGCTTA CTTGCTTATT
GCAGTAATGC CCGTATTGGC AGGCGTAGTA ACCATGATGC TTATGGATAT CCACTTCGGT
ACCAGCTTCT TTGATGCAGC CGGTGGTGGT GACCCCGTAT TATTCCAGCA CGTGTTCTGG
TTCTTCGGGC ATCCAGAGGT TTACATCATG ATTCTGCCAG CGTTTGGTGT GGTTTCGGCC
ATTATCCCAA CGTTTGCGCG CAAGCCGCTG TTTGGTTATT CATCCATGGT GTACGCCACC
GCATCCATTG CTTTCTTAAG TTTTATTGTA TGGGCGCACC ACATGTTTAC CGTAGGTATA
CCGCTGTTGG GTGAGTTGGT GTTTATGTAT GCCACCATGC TTATTGCAGT CCCTACAGGT
GTGAAGGTGT TCAACTGGGT GACCACAATG TGGAAAGGCT CCATGACCTT TGAAACCCCC
ATGTTGTTCT CTATTGCCTT CGTAATATTG TTCACCATTG GCGGCTTTTC TGGCTTGATG
CTGGCAATTG CACCGGTGGA TTTCCAATAT CACGATACCT ACTTTGTTGT TGCTCACTTC
CACTACGTAC TCGTACCCGG CGCGATATTC TCTATTACCG CAGCTGTTTA CTACTGGTTG
CCTAAGTGGT GCGGCAAAAT GTACGACGAG ACAATGGGTA AAGCGCATTT CTGGTTGGCA
TTTATTGGCT TGAACGTAAC GTTCTTCCCA ATGCACTTCT CGGGCTTGGC AGGCATGCCG
CGTCGTATTC CAGACTACAA CCCACTGTGG GCAGACTGGA ACATGATCTC TTCTATTGGT
GCATTCCTAT TTGGTGCGGC ACAGGTATTG TTCCTGTACA TCATCATTCG CACCATTATT
AGCGGCAAAA AAGCGACCGA CCGCGTATGG GAAGGTTCGC ATGGTTTGGA ATGGACAGTG
CCATCACCTG CGCCATACCA CACTTTTAGC ACGCCGCCAG AAGTGAAGTA A
|
|---|
| Protein sequence | MAHGPAKGLS RWFFTTNHKD IGSMYLWFSF AMFFLGGIFA LVIRAELFQP GLQIVEPNFF
NQMTTMHGLV MVFGAVMPAF VGLANWMIPM MIGAPDMALP RMNNWSFWIL PFAFALLAST
LFMAGGAPNF GWTFYAPLST TYAPASVTFF IFAVHIMGAS SIMGSINIIA TILNMRAPGM
TLMKMPLFVW TWLITAYLLI AVMPVLAGVV TMMLMDIHFG TSFFDAAGGG DPVLFQHVFW
FFGHPEVYIM ILPAFGVVSA IIPTFARKPL FGYSSMVYAT ASIAFLSFIV WAHHMFTVGI
PLLGELVFMY ATMLIAVPTG VKVFNWVTTM WKGSMTFETP MLFSIAFVIL FTIGGFSGLM
LAIAPVDFQY HDTYFVVAHF HYVLVPGAIF SITAAVYYWL PKWCGKMYDE TMGKAHFWLA
FIGLNVTFFP MHFSGLAGMP RRIPDYNPLW ADWNMISSIG AFLFGAAQVL FLYIIIRTII
SGKKATDRVW EGSHGLEWTV PSPAPYHTFS TPPEVK
|
|---|
| |