| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0021 |
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| Symbol | def |
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| ID | 3968154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 24696 |
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| End bp | 25214 |
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| Gene Length | 519 bp |
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| Protein Length | 172 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637919080 |
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| Product | peptide deformylase |
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| Protein accession | YP_525497 |
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| Protein GI | 90019670 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.243681 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTTTAC TCCCAATTTT AGAGTTTCCC GACCCGCGCT TGCGTACAAT TGCCAAGCCA
GTAGCAAAAG TAGACCAACG CATTCGAACA CTTATCGACG ATATGTTCGA AACAATGTAC
GACGCACCGG GTATTGGGTT GGCTGCCACC CAGGTGAATG TGCACGAACA GGTTTTAGTG
ATAGATTTAG GCGAAGAAAC CAAAGAGCCT ATGGTATTTA TTAACCCCTC TATCGAAATT
CTAGACCAAG AACACTACGA ATACGAAGAA GGCTGTTTAT CGGTGCCGGG GTTTTACGAA
CAGGTTTCTC GCCCCAAGCA TATTCGAGTT ACCGCGTTAG ACCGCGACGG CAAGGAATTT
GTGATCGAAC CTGAAGGCCT GCTGGCAGTG TGTGTGCAAC ACGAAATGGA TCATTTGAAC
GGCAAGCTAT TTGTAGATTA TGTATCCAAT ATCAAGCGCC AGCGCATTCG CAAAAAACTA
GAAAAGCAGC ACCGCCAAGC TGCGCAATCT GTCGGCTAG
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| Protein sequence | MALLPILEFP DPRLRTIAKP VAKVDQRIRT LIDDMFETMY DAPGIGLAAT QVNVHEQVLV
IDLGEETKEP MVFINPSIEI LDQEHYEYEE GCLSVPGFYE QVSRPKHIRV TALDRDGKEF
VIEPEGLLAV CVQHEMDHLN GKLFVDYVSN IKRQRIRKKL EKQHRQAAQS VG
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