Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0019 |
Symbol | |
ID | 3968838 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 22285 |
End bp | 23622 |
Gene Length | 1338 bp |
Protein Length | 445 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637919078 |
Product | Sun protein |
Protein accession | YP_525495 |
Protein GI | 90019668 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCAAAAT CGCCTAACAA ACGCATTACC AACCTTCGCG CCCTTGCCGC TATGACCTTA GCACCGGTTA TTAGCGGCAG CCGCTCGCTC TCGACCATTT TAGATAAAGC CTTGGATGCA GTAGAGCCAA AAGAAAGGCC GCTAATGCAA ACACTGTGCT TAGGCAGCTT GCGTGTATTC CCTAAAATTG ACCTAATTGC GCGAAAGTTA CTGCAAAAAC CATTTAAAAG TCGCGATAAC GACGTATATG CGCTAATTGT GCTGGGTATT TACCAAATGG ATTACCTGCG CACCCCCGAC CACGCGGCCA TTGGCGAAAC AGTAGAAGCC GCCAAAGCGC TAAACAAGCC TTGGGCCAGC AAGCTTATTA ATGGTGTGCT GCGCAATTAC CAGCGCGAGA AAGTGGCCCT GCAACACAAG CTAAACGGCA GCATGGCTTT TCAACACGCC CACCCACAGT GGTTTATCGA TTTAGTGCGC GCCGACTGGC CGCAAGATTG GCAAGCTATT TTGGCAGCTA ACAACCAACA GCCACCAATA ACATTGCGCG CCAATAAACG TCACTGCGAT CAAAAAACAC TTTTAGAAGC GCTGCACAAG GCCGAAGTTG GCGCTCACTT ATGTGAGTAT TCTCGCGATG GAATAACCTT GGAAGGCGCG TCAGATATCC CCGCCCTGCC CGGCTTTAAT GAAGGCCACT TTAGCGTGCA AGATGAAGCC GCCCAGCTTT CTGCCAGCTT GCTAGATCTT CAAGCCAACC AGCGAGTGCT CGATTGCTGC TCCGCGCCCG GCGGCAAAGC AGGCCACATA TGTGAGCAGG CAAACAACAT AGATTTAACC TGTTTAGAGT CTGATGCCAG CCGCATGCCA AGGGTTGAGC AAAACCTTGC CCGCCTCGGC CACACGGCTA AATTAATAGT AGAAGATGCC AACGAGGTGG ATAGTTGGTG GGATGGCGTG CCCTTCGATC GCATTCTATT GGATGCCCCC TGCTCCGCCA CAGGGGTTAT CCGTCGCCAC CCAGATATAA AACTACTGCG CCGCCCTTCT GATCTTGCTA AGCTTGCCCA ATTACAAGCG CAGATCTTGC GCAGCGTATG GCGTACCTTA GCGCCTGGGG GCAAACTGCT TTACGCCACA TGTTCGGTGC TAAAGCAAGA GAACGAAAAC ATCGTTAGCC ATTTTGTAAG CGAACAAAAT GATGCGCGAC ATATCCCTCT CGATAACAAT CAACCCGTAA CCTGGGGAGT TGAACGTCCA TTTGGCCGAC AACTGTTCCC ACAGGAAAAC GGGCACGACG GGTTTTATTA CGCGTTACTA GAAAAAACCC GCGACTAA
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Protein sequence | MAKSPNKRIT NLRALAAMTL APVISGSRSL STILDKALDA VEPKERPLMQ TLCLGSLRVF PKIDLIARKL LQKPFKSRDN DVYALIVLGI YQMDYLRTPD HAAIGETVEA AKALNKPWAS KLINGVLRNY QREKVALQHK LNGSMAFQHA HPQWFIDLVR ADWPQDWQAI LAANNQQPPI TLRANKRHCD QKTLLEALHK AEVGAHLCEY SRDGITLEGA SDIPALPGFN EGHFSVQDEA AQLSASLLDL QANQRVLDCC SAPGGKAGHI CEQANNIDLT CLESDASRMP RVEQNLARLG HTAKLIVEDA NEVDSWWDGV PFDRILLDAP CSATGVIRRH PDIKLLRRPS DLAKLAQLQA QILRSVWRTL APGGKLLYAT CSVLKQENEN IVSHFVSEQN DARHIPLDNN QPVTWGVERP FGRQLFPQEN GHDGFYYALL EKTRD
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