Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0002 |
Symbol | |
ID | 3968821 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 2145 |
End bp | 3248 |
Gene Length | 1104 bp |
Protein Length | 367 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637919061 |
Product | DNA polymerase III subunit beta |
Protein accession | YP_525478 |
Protein GI | 90019651 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0000000905958 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.127223 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTCA TTGTTTCACG TGAAACTATT CTTAAACCAC TACAGTTGGT TGCCGGTGTG GTAGAGCGTC GTCAAACATT GCCCGTGTTG GCAAACGTAT TGATTGTATT AGAAGGCGAG CAGTTGTCGC TTACAGGTAC AGACCTTGAG GTAGAGATTG TGGGCCGCGT AACTGTCGAT CAGGCAATTA GCGAAGGCGA AATTACTGTA CCCGCTAAGA AGTTCCTAGA TATATGTCGT GCACTACCAG ACGGTTCAGT TATTGAGTTT ACGCTTGATG ATCAGAAAGT TACTGTAAAA AGTGGCCGCA GTCGTTTTAC GCTTTCATCT TTATCTGCCA ATGAATTCCC AGCGGTAGAG CAGGGCAGCA ACGATATTAA CTTTAGCTGC GAGCAAAAAG AGGTTAAGCG CCTTATTGAT CGCACTGCGT TTGCTATGGC GCAGCAAGAT GTTCGTTACT ACTTAAATGG TATGTTGTGG GAAGTGCGAG CAGGAGCTTT ACGTGTAGTG TCTACCGATG GCCACCGATT AGCCATGTGT ACTCGCCCAA TCAATATAGA TGTAGCAGAG CCAGTACAGG CAATTTTGCC GCGTAAGGGT GTTATTGAAT TGTCGCGCTT GCTTAACGAT TCAGAAGAAA ATGTTGAGCT AACTATGGGC CCTAACCATA TTCGTGCTAC CACTACTGAA TACACCTTTA CCTCCAAGCT TGTAGACGGC AAGTTCCCAG ATTACGAGCG CGTATTACCT AAGGGTGGGG ACAAGATTGT ATTGGGTGAG CGCGCTGTAC TAAAACAAGC ATTTGCCCGT ACAGCTATTC TTTCTAACGA GAAATACCGC GGTGTGCGTC TTCTATTAGA AACTGGCCAG CTTACTATTA TTGCTAACAA CCCAGAGCAA GAAGAAGCTG AGGATCAAGT AGCCGTAGAG TATGAAGGTG ACTCAATTGA GGTAGGTTTT AACGTTAGCT ACCTACAAGA TGTAACCAAC GTACTAGATA CAGACAAGAT TAAAATGACG CTTTCTGATT CTAATAGCAG TGCTTTGCTA GAAGAGCCAG AAAACGCCGA CTCTGTATAT GTAGTAATGC CAATGCGTCT ATAA
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Protein sequence | MKFIVSRETI LKPLQLVAGV VERRQTLPVL ANVLIVLEGE QLSLTGTDLE VEIVGRVTVD QAISEGEITV PAKKFLDICR ALPDGSVIEF TLDDQKVTVK SGRSRFTLSS LSANEFPAVE QGSNDINFSC EQKEVKRLID RTAFAMAQQD VRYYLNGMLW EVRAGALRVV STDGHRLAMC TRPINIDVAE PVQAILPRKG VIELSRLLND SEENVELTMG PNHIRATTTE YTFTSKLVDG KFPDYERVLP KGGDKIVLGE RAVLKQAFAR TAILSNEKYR GVRLLLETGQ LTIIANNPEQ EEAEDQVAVE YEGDSIEVGF NVSYLQDVTN VLDTDKIKMT LSDSNSSALL EEPENADSVY VVMPMRL
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