| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_3831 |
|---|
| Symbol | |
|---|
| ID | 4845873 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | - |
|---|
| Start bp | 4502077 |
|---|
| End bp | 4503297 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640121095 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_001052171 |
|---|
| Protein GI | 126176022 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00398408 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATTT ATCAATACCG TGGACGCAGT GGTCAAGGTC AATCCGTTAC AGGGCAATTG
GATGCGGCAT CGGAAAGTGC CGCTGCTGAC ATGCTATTGG CGCGGGGGAT TATCCCCCTT
GAGGTCAAAG TCGCCAAAGT GGTTAAGTCA TTCTCACTGA CTAAGTTATT TGGTGGAAAA
GTCGCGTTAG AAGAATTACA GATTTTTACT CGGCAAATGT ACTCCTTGAC CCGTTCTGGC
ATCCCGATTT TGCGGGCGAT TGCGGGCTTG TCTGAAACGG CGCATTCCCA GCGGATGAAA
GATGCGCTCA ATGATATTTC TGAGCAGCTC ACCGCAGGCC GACCCTTATC ATCATCCATG
AATCAACATC CCGATGTATT TGATTCCTTG TTTGTTTCTA TGGTGCACGT GGGCGAAAAC
ACAGGTAAGT TAGAAGATGC CTTTATTCAG CTGTCGGGCT ATATCGAGCG TGAGCAGGAA
ACACGGCGGC GAATTAAATC GGCCATGCGT TATCCCATGT TTGTCTTGAT TGCGATTGCG
CTCGCTATGG TGATCCTCAA TATTATGGTG ATCCCTAAGT TTGCCGAGAT GTTTTCCCGC
TTTGGCGCCG ACTTACCTTG GGCGACAAAA GTGCTGATTG GTACATCGAA TCTGTTTGTG
AATTATTGGG CGCTGATGTT GGTGGCGCTG ATCGGCACTA TTATCGGCAT CCGTTATTGG
CACCATACGG AAAAGGGCGA GAAACAGTGG GATAAGTGGA AGTTACACAT CCCTGCCGTG
GGATCGATTA TCGAGCGCTC GACGTTAGCC CGTTATTGTC GCAGTTTCTC TATGATGCTG
AGCGCTGGCG TGCCGATGAC GCAGGCCTTA AGTTTAGTGG CTGATGCGGT AGATAATGCC
TACATGCACG ACAAAATAGT CGGTATGCGC CGTGGGATTG AGTCTGGCGA CTCTATGTTG
AGGGTATCGA ATCAGAGTAA GTTATTTACG CCGCTGGTGC TGCAAATGGT GGCAGTGGGT
GAAGAAACGG GGCAAATCGA TCAATTACTC AATGATGCGG CAGACTTCTA TGAGGGCGAA
GTAGACTATG ATTTAAAGAA CCTCACCGCT AAATTGGAGC CTATTTTGAT CGGTTTTGTG
GCCGTGATTG TACTCGTGTT GGCCTTAGGG ATATACCTGC CCATGTGGGA TATGCTTAAT
GTGGTCAAGG GCGGTAAATA A
|
|---|
| Protein sequence | MPIYQYRGRS GQGQSVTGQL DAASESAAAD MLLARGIIPL EVKVAKVVKS FSLTKLFGGK
VALEELQIFT RQMYSLTRSG IPILRAIAGL SETAHSQRMK DALNDISEQL TAGRPLSSSM
NQHPDVFDSL FVSMVHVGEN TGKLEDAFIQ LSGYIEREQE TRRRIKSAMR YPMFVLIAIA
LAMVILNIMV IPKFAEMFSR FGADLPWATK VLIGTSNLFV NYWALMLVAL IGTIIGIRYW
HHTEKGEKQW DKWKLHIPAV GSIIERSTLA RYCRSFSMML SAGVPMTQAL SLVADAVDNA
YMHDKIVGMR RGIESGDSML RVSNQSKLFT PLVLQMVAVG EETGQIDQLL NDAADFYEGE
VDYDLKNLTA KLEPILIGFV AVIVLVLALG IYLPMWDMLN VVKGGK
|
|---|
| |