| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_3235 |
|---|
| Symbol | |
|---|
| ID | 4842574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | + |
|---|
| Start bp | 3792806 |
|---|
| End bp | 3794860 |
|---|
| Gene Length | 2055 bp |
|---|
| Protein Length | 684 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640120493 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001051584 |
|---|
| Protein GI | 126175435 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.612111 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGGCC GTTTTAAGTC ACTGACGTGG AAACAAACTA ACCTAGTCGT ATTTACTGCC
CTATTTTTTG CCATTGCCAT TTTTATTGTT GAAATCGCTT TAGTCGTCGT CTCAACCAAA
CAACAACTCA CGACTACGCA GCAAGAACTC CTTGATTCAG TTGAACAACC CGCAGCAAAT
GCCGTCTGGG CATTGGATGA CAATTTAGCC CGTCAAACCT TAGAAGGTGC CATTAAGGTT
GAGCATGTCG GCTCAGCAGT GATTGAGCTG GACGATGGTT CCATGTTTGT GTCAGTCAGC
AATAATAAAA AGAATAACTC GCAGACATTT ATCAGCTTAA GTAACAAATT ATTTGATGAT
CTTAAAGAAA TCTCTCGCCC GCTGTACCGA CCTTTTTATT TCGAAGGCAC CCAACAACAG
CAACTCATTG GCACATTAAC GGTTTTCTAC GATACCCAAG AGCTGACAAA CACCCTTTTC
TCACAGTTAA GATTTAGTTT TTTCGCCACA CTTGCCCGCG CACTCTTACT CACCTTAGTG
CTTTCAGTGG TTTTCCATCG TTTCTTGACT CAACCTATCG CGCGTATCAG TGAGGCCATA
GATAAGATTG AACCCGACTC ACCGGACGAA AATCTCTTAC CTATGTCCAA TGCGCACAAG
GATGATGAAC TCGGCCTAGT GACCTCGAAA TTCAACCAAA TTCTTATCCA ATTTAGCCAA
ACCCAATCCA AACTGCGCAA AATGGCGACC CGAGATCCGC TAACGGGTTT ACCGAACCGC
ACATTATTGC TCGAAACCAT CGCAGTCACT ATCCAACGTT CGCGCGTGCA CAAACGCAGC
TTTGCCTTAA TGTTTATCGA CTTAGATCGA TTTAAGAATA TTAACGATTC CCTTGGCCAC
GCATTAGGCG ATCAATTCCT CGCCCGTATC GCCCGTATTC TTGAACGCTT CGTTGGCGAT
AAAGGCACAG TCTCTCGCTT AGGTGGCGAT GAGTTTGTGA TTTTAGCCGA CACAGTACAC
ACCCCAGATC AAGCCGCTGA CTTTGTTGAT AAGTTACTTA TCCAGCTTAA TGTCCCTATC
CAATTAAATG AACATGCGAT TCATCCTGCG GCCTCAATTG GCATATCCAT TTATCCCGAA
GACGGTAACA GCGCAGAAGA TTTGATACGT CATGCCGATA TTGCCATGTA CAGCGCCAAA
GCTGCAGGCT CCAATCAATG GGCCTTCTTT AAACAACAGA TGACAGAACG CGCCGCTGTG
CGTTTACGCA CTGAAGCATC CTTGCATGAT GCGTTAAAAA ACAACGAATT TTTGCTGTAT
TTCCAACCTA AACTCGATCT GCAAACGGGC AAAGTGATTG CCTGTGAAGC TCTGATCCGC
TGGCAAAAAG ATGGGCGACT CATCAGTCCG GTTTCTTTTA TTCCCGTAGC CGAAGAAACG
GGGATCATCA TTCCGATTGG CCGCTGGGTG ATAGAACAAA GCTGCAAAGT CTTAAGGGAG
TGGCAAAAGA AATATAACTA TGCCATCCCG ATTGCGATTA ATGTCGCCTC ACAGCAATTC
GCCGACGCCA GTTTAGTACC CGATATCAAA CAGATGGCAT TACGTTATCA GATCCAGCCT
GAGCTACTGG AAATTGAAAT CACTGAAACC TCGCTGATGA ACGACATTGA GCTCGCCATC
GCTAAGCTTG AACAACTTAA ATCAGCAGGG TTTAGTATTG CCGTCGATGA CTTCGGCACC
GGATATTCAT CACTCTCTTA CCTGCGCCAT TTGCCCATCA CCACCATGAA AATCGACCGC
TGTTTCGTGT CCGATTTACC AGGGGATAGC GCAATTGCAT CGACCATTTT GATGTTAGGT
AAGCAGCTTA ATTTGACCAT TGTGGCCGAA GGGATTGAAA ACGAGCAACA ATTGGATTGG
TTGAAGGAGA ATCAGTGCCA AGTCGGCCAA GGTTTCTATT TTAGCCAACC CCTGCCCCAA
GCGGAATTTG AAGCCCAGTA TATAGCAACA CAGACAGCAA CGATAAGCAG TCTTGATGGC
TTACGTGGAG CTTAG
|
|---|
| Protein sequence | MTGRFKSLTW KQTNLVVFTA LFFAIAIFIV EIALVVVSTK QQLTTTQQEL LDSVEQPAAN
AVWALDDNLA RQTLEGAIKV EHVGSAVIEL DDGSMFVSVS NNKKNNSQTF ISLSNKLFDD
LKEISRPLYR PFYFEGTQQQ QLIGTLTVFY DTQELTNTLF SQLRFSFFAT LARALLLTLV
LSVVFHRFLT QPIARISEAI DKIEPDSPDE NLLPMSNAHK DDELGLVTSK FNQILIQFSQ
TQSKLRKMAT RDPLTGLPNR TLLLETIAVT IQRSRVHKRS FALMFIDLDR FKNINDSLGH
ALGDQFLARI ARILERFVGD KGTVSRLGGD EFVILADTVH TPDQAADFVD KLLIQLNVPI
QLNEHAIHPA ASIGISIYPE DGNSAEDLIR HADIAMYSAK AAGSNQWAFF KQQMTERAAV
RLRTEASLHD ALKNNEFLLY FQPKLDLQTG KVIACEALIR WQKDGRLISP VSFIPVAEET
GIIIPIGRWV IEQSCKVLRE WQKKYNYAIP IAINVASQQF ADASLVPDIK QMALRYQIQP
ELLEIEITET SLMNDIELAI AKLEQLKSAG FSIAVDDFGT GYSSLSYLRH LPITTMKIDR
CFVSDLPGDS AIASTILMLG KQLNLTIVAE GIENEQQLDW LKENQCQVGQ GFYFSQPLPQ
AEFEAQYIAT QTATISSLDG LRGA
|
|---|
| |