| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_3147 |
|---|
| Symbol | rumA |
|---|
| ID | 4845783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | - |
|---|
| Start bp | 3684955 |
|---|
| End bp | 3686307 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640120406 |
|---|
| Product | 23S rRNA 5-methyluridine methyltransferase |
|---|
| Protein accession | YP_001051497 |
|---|
| Protein GI | 126175348 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0637752 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAAT TTTTTAAAGC AAAACCAAAT AGTTCCAAAC AGTTGTCGGC TAAGTTATCG
CTGAGCGTGA ATCAGCTCGA TCACTTAGGG GCAGGTATAG CACAACATCA AGGTAAAGTC
GTGTTTATCC CCGGCGCACT GCCCGATGAA ACCGTGACGG TACAGTTCAC CGAGCAAAAG
AAAAATTATG CCCGCGCTAA GTTAATTAAA GTCGATACAC CTAGCTCTGA GCGCGTCGAG
CCTGAGTGTC CACACTATCA CACCTGCGGC GGCTGCGACT TACAGCATAT GTCATTATCG
GGCCAGCGTG AGCATAAAGA AGCGGCGCTG CTGGATATTA TGGCTAAGTT TGCCGGCGCC
GAAGGCGGCA CGTTATCGCC CGAATTAACG GGGGAAGGTT GGCATTATCG TCGCCGTGCC
CGTCTTGCGA CTTTATTTGA TAAAAATACT AAACACTTAA GCTTAGGTTT TCGTGCCGCT
AGTAGCAGCA ATGTGGTGCC TATCAGTCAG TGTCAGGTGT TAGCTAAGCC GTTATCAGAT
TTGATCGTCC CCTTTGCTAA GTTGCTGAAT CAATTAACGG CTAAAGCCAG CTTAGGTCAC
CTTGAGTTAA TTGCCGCCGA TAATGGTCAC TTCGCTGTGC TGCGTATCAC TAAGGCGCTC
AACGATAAAG ATCTCGCTAA GCTGTCAGCC TTTGCCGAGC AGCATCAAAT TCACATTTGT
CTGCAGGATA ATGAAGGCCA ATTCCAAGGC GTTGGCGCAG AGTTAGTGTT ACCGGTTTAT
CAGCTGTTAG ATGACAAAGC TGAGTCGGAT GCGGTGAGTT TAAGCTTCAC CCCAGGTAAC
TTTGTGCAAG TGAATGGGCA GATTAACAAG GCCATGGTCG CCCAAGCGAT GGATTGGTTA
GCGCCAGCGC TAGATGAGCG CATTTTGGAT TTGTTCTGCG GTATGGGGAA TTTTAGTTTG
CCCTTAGCGA AAATGGGCGC GGATGTGATT GGCGTCGAAG GGGTTGCCGA GATGGTAACT
CAGGCACGGG TGAACGCGAA AGCTAACAAT TTGGATAAAC TGACCTTTTT CCACGGCGAT
TTAAGTGCGG ATTTATCCCT TGAGCCTTGG ATGGGCAAAA TTGATAAATT ACTGCTCGAT
CCTGCCCGTG CTGGGGCGTT TGAAAGCTTG CAATGGCTGA AGAAAATGAA GCCGCGCAAA
GTCGTGTATG TTTCGTGTAA TCCTGCGAGC TTGGCCCGCG ATAGCGCTGT ACTGTTAGAG
CGCGGTTACC GATTACAGCA ATTGGGACTT ATCGACATGT TCCCACAAAC ACACCATATC
GAAGCCATGG CACTGTTTGA ATTAACCAAG TAA
|
|---|
| Protein sequence | MAQFFKAKPN SSKQLSAKLS LSVNQLDHLG AGIAQHQGKV VFIPGALPDE TVTVQFTEQK
KNYARAKLIK VDTPSSERVE PECPHYHTCG GCDLQHMSLS GQREHKEAAL LDIMAKFAGA
EGGTLSPELT GEGWHYRRRA RLATLFDKNT KHLSLGFRAA SSSNVVPISQ CQVLAKPLSD
LIVPFAKLLN QLTAKASLGH LELIAADNGH FAVLRITKAL NDKDLAKLSA FAEQHQIHIC
LQDNEGQFQG VGAELVLPVY QLLDDKAESD AVSLSFTPGN FVQVNGQINK AMVAQAMDWL
APALDERILD LFCGMGNFSL PLAKMGADVI GVEGVAEMVT QARVNAKANN LDKLTFFHGD
LSADLSLEPW MGKIDKLLLD PARAGAFESL QWLKKMKPRK VVYVSCNPAS LARDSAVLLE
RGYRLQQLGL IDMFPQTHHI EAMALFELTK
|
|---|
| |