| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_1465 |
|---|
| Symbol | dnaE |
|---|
| ID | 4842908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | + |
|---|
| Start bp | 1697914 |
|---|
| End bp | 1701387 |
|---|
| Gene Length | 3474 bp |
|---|
| Protein Length | 1157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640118685 |
|---|
| Product | DNA polymerase III subunit alpha |
|---|
| Protein accession | YP_001049852 |
|---|
| Protein GI | 126173703 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGATC CTCGTTTTGT GCATCTTCGT GTCCACAGTG ACTTCTCAAT GACCGATGGC
GTGGCCAAGG TCAAGCCTAT TTTGGCACAG GTGGAAGCGC AGGGAATGGC GGCTGTCGCC
CTGACTGACC AAAACAACTT TTGTGGTTTG GTTAAGTTTT ACAGTGGTTG CCATGGTGCG
GGGGTCAAAC CGATTATCGG CGCCGATTTT TGGATGCAAG TGCCCGGATT CGAAGGCGAA
TTATGCGCCT TGACCATAAT TGCGATGAAC AATGTTGGTT ATCAGAATCT GACCCAAATT
ATCAGTCAGG CCTATTTGCG TGGCCAAGTG GCTGGGCGCG TGGTGATCGA CCAAGAGTGG
TTACTCACTT ATAACGAAGG CATTTTGCTG TTATCAGGCG CCAAAGAGGG CGATCTGGGT
AAGGCGCTCC TCAAGGGTAA TAGCACTCAG GTTGAATCTT TATGTGAGTT TTATCAAACT
CATTTCGCCG ATCGTTATTT TCTCGAACTC ATTCGTACCG GTCGCCCCGA CGAAGAGCGC
TATCTGCACA TGGCTGTAAT CTTAGCGCAG GAGAAAGGCA TTCCTGTGGT CGCCACCAAT
CAGGTGGTGT TCCTTAAACC TGAAGATTTT GACGCCCATG AAATTCGAGT CGCCATCCAC
GATGGTTTTA CCCTTGCCGA TCCGCGCCGT CCTAAAAAGT ACAGTGAACA GCAGTATTTA
CGTAGCGAAG AGGAAATGTG CGAGCTATTT GCCGACATTC CCGCGGCGCT TGCGAACAGT
GTCGAAATCG CTAAACGTTG CAACGTGACG ATTCGTTTGT ACGAGTATTT CCTGCCCAAC
TTCCCGACGG GCGATATGTC CATCGAAGAC TTTCTGGTCG ATTGCTCGAG GAAGGGCCTT
GAAGAGCGGC TCGAGTTTTT GTTCCCCAAT CCAGAAGTGC GCGCCGAGAA ACGGGGCGAA
TACGATGAGC GACTTGATAT CGAACTCAAA GTGATCAACC AGATGGGGTT CCCCGGTTAC
TTCTTGATCG TGATGGAGTT CATCCAATGG GGTAAAGATA ACGGTATCCC AGTGGGACCC
GGTCGTGGTT CGGGGGCGGG TTCACTTGTG GCCTATGCGC TCAAAATCAC CGACTTAGAT
CCGCTCGAAT TTGACTTACT GTTCGAACGT TTCTTGAACC CTGAGCGTGT TTCTATGCCC
GACTTTGACG TCGATTTTTG CATGGATAGA CGCGATGAAG TGATCGACCA CGTGGCCGAG
TTGTACGGCC GCGAAGCGGT ATCGCAAATT ATCACCTTTG GTACTATGGC GGCAAAAGCG
GTTATCCGCG ACGTTGGCCG AGTGCTCGGT CATCCCTATG GTTTCGTTGA CCGAATTTCA
AAATTAATTC CACCTGAGCC CGGCATGACA CTGGCGAAAG CCTTTGAAGT CGAGCCAGCG
TTGCAAGAAT CTTATGATGG CGATGAAGAC GTAAAAGATC TGATCGACAT GTGCCGTAAG
CTCGAGGGCG TAACCCGTAA CGCCGGTAAG CACGCCGGTG GTGTAGTGAT TGCACCGACA
AAAATTACCG ATTTTGCGCC GCTCTATTGC GATGCAGAAG GCAAAAACCC AGTAACACAA
TTCGATAAAA ACGACGTTGA AACCGCAGGG CTGGTTAAGT TCGACTTCTT GGGATTAAGA
ACCCTGACGA TTATCGACTG GGCGCTCGAG ATGGTGAATA AGGTCGAAGT GAAAAACGGG
CGCAAACCAA TACGGATTGA GGCGATTTCA CTCACGGATC CCGCCTGTTT CCGTCTGCTG
CAAAAGTATG AAACTACGGC GGTATTCCAG CTCGAATCCC GTGGTATGAA GGATTTGATT
AAGCGTCTGC AGCCCGATTG TTTCGAAGAC ATGATCGCAC TGGTGGCATT ATTCCGTCCG
GGGCCCTTGC AGTCGGGCAT GGTAGATAAC TTTATCGAAC GTAAGCATGG GCGCGAGGAA
GTCTCGTACC CAGATTCTCA GTATCAACAT GAATCGCTTC GTGAGCTGTT ATCGCCGACC
TACGGCATTA TTCTGTATCA AGAGCAGGTG ATGCAGATTG CGCAGGTGCT GTCGGGCTAC
ACCCTTGGCG GTGCCGACAT GCTGCGCCGT GCTATGGGTA AGAAAAAGCA CGAAGAGATG
GCCAAGCAGC GCAGTATCTT TAAAGAAGGC GCAATCAATA ACGGCGTCGA TGGCGACTTG
TCGATGAAGA TCTTCGACTT AGTGGAAAAG TTTGCTGGCT ACGGTTTTAA CAAATCCCAC
TCCGCCGCTT ATGCGCTGGT TTCCTATCAA ACCTTATGGC TTAAAACCCA TTTTCCTGCG
CAGTTTATGG CGGCGGTAAT GTCGGCCGAT ATGGATAACA CAGATAAGAT TGTGACCTTG
GTCGATGAAT GTGAGCGTAT GGGCTTGCCG CTTATTCCGC CGGATGTGAA CAAAGGTTTG
TTCAAATTTA CCGTCGATGA TGATCTGCGC ATTGTTTATG GCATCGGCGC CATTAAAGGT
GTGGGCGAAG GCCCAGTTGA ATCGATTTTA GAGGCGCGTA AAGACGGCCC CTTTGTCGAT
TTATTCGATT TCTGTGCCCG CATCGATTTG AAAAAACTCA ATAAGCGTGT GATTGAAAAG
CTGATCTGCG CGGGCGCCTT AGACAATCTT GGGCCGCACC GTGCGTCAAT GATGGCCACC
TTGCCTGAAG CGATTCGCGC CGCCGATCAA CATGCTAAAG CCGAAGCGAT TGGCCAACAC
GATATGTTTG GTTTGCTCAA CAGTGAACCA GAAGACAGCA AGCAGCAGTT TGTTGAATGT
ACTCCTTGGC CGGATAAAAT TTGGCTTGAA GGCGAGCGCG AAACCTTAGG CTTGTATTTG
ACCGGTCATC CGATCAATCA ATATTTAAAA GAGCTTAAGC ATTACACGTC CGGGCGTTTG
AAAGATGTGC ATCCTACCGA GCGCGGTAAA ACAGCCAAGG CTGCGGGTTT AGTGGTAGCA
ACACGCGTGA TGTTGACCAA GCGCGGCTCG AAAATGGGTC TGTTGACGCT TGATGATAAG
AGCGCGCGGC TTGAGATCAT GTTGTTTACC GAAGCCTTTG AAAAGTTTAA TCATCTGCTG
GAAAAAGATC ATATCCTCAT TTGTGAAGGT GAGGTGAGTT ACGATGATTT TGCCGGCGGC
AACCGCATGA CGGCGCGTAA CATTATCGAC ATCAGTGAGG CGCGAAGTCA CTTTGCTAAG
GCGCTAGAAA TCGATATGGA TGGCAGTGAG TTAACGCCAT CAGCCCTCGA TACCTTCGAG
CAAGCCTTAA GTCCGTGGCG TAACGGCGCC GTGCCTGTGG TAATCAACTA CACTCAAGCC
CAAGCCAAAG GTCAATTTAG GCTCGCCGAT GCTTGGCGAG TGAATCCGAC CGATGACTTG
ATGCTCTCGC TTGAATCGCT GCTCGGGCCA AACAAGGTGA GAATTTTATT CTAA
|
|---|
| Protein sequence | MSDPRFVHLR VHSDFSMTDG VAKVKPILAQ VEAQGMAAVA LTDQNNFCGL VKFYSGCHGA
GVKPIIGADF WMQVPGFEGE LCALTIIAMN NVGYQNLTQI ISQAYLRGQV AGRVVIDQEW
LLTYNEGILL LSGAKEGDLG KALLKGNSTQ VESLCEFYQT HFADRYFLEL IRTGRPDEER
YLHMAVILAQ EKGIPVVATN QVVFLKPEDF DAHEIRVAIH DGFTLADPRR PKKYSEQQYL
RSEEEMCELF ADIPAALANS VEIAKRCNVT IRLYEYFLPN FPTGDMSIED FLVDCSRKGL
EERLEFLFPN PEVRAEKRGE YDERLDIELK VINQMGFPGY FLIVMEFIQW GKDNGIPVGP
GRGSGAGSLV AYALKITDLD PLEFDLLFER FLNPERVSMP DFDVDFCMDR RDEVIDHVAE
LYGREAVSQI ITFGTMAAKA VIRDVGRVLG HPYGFVDRIS KLIPPEPGMT LAKAFEVEPA
LQESYDGDED VKDLIDMCRK LEGVTRNAGK HAGGVVIAPT KITDFAPLYC DAEGKNPVTQ
FDKNDVETAG LVKFDFLGLR TLTIIDWALE MVNKVEVKNG RKPIRIEAIS LTDPACFRLL
QKYETTAVFQ LESRGMKDLI KRLQPDCFED MIALVALFRP GPLQSGMVDN FIERKHGREE
VSYPDSQYQH ESLRELLSPT YGIILYQEQV MQIAQVLSGY TLGGADMLRR AMGKKKHEEM
AKQRSIFKEG AINNGVDGDL SMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKTHFPA
QFMAAVMSAD MDNTDKIVTL VDECERMGLP LIPPDVNKGL FKFTVDDDLR IVYGIGAIKG
VGEGPVESIL EARKDGPFVD LFDFCARIDL KKLNKRVIEK LICAGALDNL GPHRASMMAT
LPEAIRAADQ HAKAEAIGQH DMFGLLNSEP EDSKQQFVEC TPWPDKIWLE GERETLGLYL
TGHPINQYLK ELKHYTSGRL KDVHPTERGK TAKAAGLVVA TRVMLTKRGS KMGLLTLDDK
SARLEIMLFT EAFEKFNHLL EKDHILICEG EVSYDDFAGG NRMTARNIID ISEARSHFAK
ALEIDMDGSE LTPSALDTFE QALSPWRNGA VPVVINYTQA QAKGQFRLAD AWRVNPTDDL
MLSLESLLGP NKVRILF
|
|---|
| |