| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_1251 |
|---|
| Symbol | |
|---|
| ID | 4843851 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | + |
|---|
| Start bp | 1439869 |
|---|
| End bp | 1442634 |
|---|
| Gene Length | 2766 bp |
|---|
| Protein Length | 921 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640118470 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
|---|
| Protein accession | YP_001049638 |
|---|
| Protein GI | 126173489 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGATAG ATGTACCTAT TTCGCAGCAA GAGCTGGATA ACTGGTTGAG GGACGTTAAC
TTAGTCGCCG AGATATCAAA CAGTAAAGCA ATATTAATAG CATGGAATGC TGCGGGTGAA
CTTAGCAGTA TGTTAAGTTC AGATTCTGCG GCTGAAAGCG AAATACAGGC AATACTCTGT
CAGTTAAGTG GCAATCATTC GGCGAAAACC CTGCCTATCG CAACATTATC AGCTAATACG
TCATCAACCG CTACACAGTC CAAAGCCACT CCATCAACAG CCACGCCATC AAAAGCGACG
ACATCAGAAC TCACTTTCAA TCCGTCCGAT ACGTTTGAAA CTTCCGTTGA TGCCCAATTA
GCCCAAGAAC AGTTGGTCAG CTCAACCGAG CCGATTTCGG TATTGCCGCG ATTAGGTCAC
CATCAAATCA CCTCGTTATT ATCTGTGTCA GAGTTAACTG AGCTAGTCAG TCAGTCCCAA
TTGATCATAG ATACTCGGCA GCACTCAGAT TGGCGCACTT GTAGCGCAAT CGGCAGTGTG
ATTTGTTTAT CCCTCGCTTG GCCATCTGGG GCAAATTTTG GCTTTTTATG TTTCTATCAT
AACGAGGCGC ATGGCGTAGA TTCGAAAACG CTGCAGCTGG CAAAGCTTAT TAGCGATAGC
ATTCAACGCC AGTTAGGCGA GATATTGAGC CAGCACAGTG CAGCTCAAAC ATTAAGCCGA
GGTGCGCCAA GCTGTGTCGA TGCGGTCGAT TTACAAACCT TTATCGATAG TTTTGAAGAA
CATATTTGGA TGAAAAATGC CGCTGGCATT TACACACTCT GTAATCGCAG CGTCGAGAAA
GCATGGGAAA TGCCGCGCAG CGAGATTGTC GGTAAATCCG ATGTCGAACT CTTTGGTGCT
GAAATTGCGA ATATTTTTCT AGAGGGTGAT AGGCTCGCTA TCGAGTCTGG CATGCCTATT
ATTGTCGCTG AGTGTTTAGA CGGCAATGAA GCTAAAAATC ATCTTTGGTT AGAAACGCTC
AAACTCCCAA CCTTAAATCC CCAAGGAGAG TTTGTAGGCG TTATCGGTAT GACTCGCAAT
ATTTCTAAGC ATAAAGCGGT TGAAGAACAA CTGACACTGG CGACCAATGT GTTTAAAAAC
TCGGTCGAAG GCGTGGTTGT GACCGACAGA CACGGCAATA TCACCGACGT AAATGGCGCA
TTTTTTGAGA TCACAGGTTA TGTGAGGGAA GAGCTGCTCG GTCAGAATCC ACGTATTTTT
AGCTCGGGTC GCCATGATAA AGCATTCTTC GACAAACTGT GGAATGCCCT GTTGGCTAAC
GGTAAGTGGA ACGGTGAAAT TTGGAATCGG CGTAAAAACG GCACTATTTT CCCGCAAAAT
ATCACCATAA GTACGATTTA TGATGAAGTC GGTGATGTGC GTTATTTTGT CGCTGTGTTT
GCCGATATTT CTGCCCAAAA AGAGAATGAA GCGCAACTCA CGCACTTAGC GTATTTCGAC
CCGCTAACGC ATTTGCCTAA TCGCATGAAG TTTATGATGC AGCTCAAACA AGAAGTACGG
CAAGCTAAGC GGCTGAATTT GCAGTTAGCG ACTGTGATGA TAGATGTCGA TTTGTTTAAG
CATATCAACG ACAGTTTTGG CCATAGCATA GGTGATGAAA TGCTGGTCGA GCTTGCCAAG
CGTTTACGCA GCCAAGTAGG CGATCAGGAT GTATTATCAC GGATTGGTGG CGATGAGTTT
GTGGCGTTAA TTTCGGGGAT CGATAATAAC GAGGATGCCA CGGTTGCCAT TAATCAATTA
CGCCAAGTGT TTGAACAACC TTTTATTGTG AGCACAGGCG ACCACTTGCG TTTGACCGCG
AGCATGGGCG TGTCTTTGTA TCCAAATGAT GGAACCGATG CGGACACTCT ACTGCGTAAC
GCCGATGCGG CCATGTATCG TGCAAAAAAT GATGGCCGCA ATAATTATGC TTTTTATACT
GAGTCCTTAA CGCAGCAATC TTTTGAACAT CTTAAGCTGC AAAGTGCCCT CTATGGTGCG
ATTGAGCAAA ATGCCTTGTA CTTGATGTAC CAGCCAAAAC TCGACTTAGT GTCTCGAAAA
ACCGTGGGAT TTGAAGCGCT GCTGCGTTGG CACGATCCTC AACTGGGTTT GATTTCTCCC
GCGGTATTTA TACCCGTGGC AGAAAAAATT GGTCTTATCC ATGAGATAGG TTTATGGGTG
TTAGAAACCG CCTGTCGTCA GGGCATGCGT TGGCTTAGTG AAGGTAAACA CTTTGGCCGC
ATTGCAGTGA ATGTGGCCGG ACAACAGTTA CAGCGTAGTT CCTTTGTGGA TGATGTAAAA
CGTGTCTTAG CTGAAACGGG CTTGCCCGCC AAACACTTAG AGCTTGAAGT GACCGAAAGT
GTGATGATGC AAAATCCCGA TCTTGCTATC CGTGACTTAA AGTTACTTGG CGATCTGGGC
ATCGAATTAT CTGTTGATGA CTTTGGAACC GGTTATTCAT CGCTGAATTA TTTGAAAAAA
CTACCCATCC ATAAGCTGAA GATTGACCAA TCCTTCGTGC GGGATATTCC CTTCGACACT
AACAATACCG CGATTGCTAA AGCTGTGATT GCGCTTGGAC ATGCGTTGAA GCTCGACATT
ATCGCCGAAG GAGTGGAAAC CAAAGAACAA GCCGATTTTC TGCAACAAAA TCAGTGCGAT
CAAGCCCAAG GTTATCTCTT TAGTCGTCCG CAACTACCAG AAGATCTCGA CGCATTTCTA
TCGTGA
|
|---|
| Protein sequence | MMIDVPISQQ ELDNWLRDVN LVAEISNSKA ILIAWNAAGE LSSMLSSDSA AESEIQAILC
QLSGNHSAKT LPIATLSANT SSTATQSKAT PSTATPSKAT TSELTFNPSD TFETSVDAQL
AQEQLVSSTE PISVLPRLGH HQITSLLSVS ELTELVSQSQ LIIDTRQHSD WRTCSAIGSV
ICLSLAWPSG ANFGFLCFYH NEAHGVDSKT LQLAKLISDS IQRQLGEILS QHSAAQTLSR
GAPSCVDAVD LQTFIDSFEE HIWMKNAAGI YTLCNRSVEK AWEMPRSEIV GKSDVELFGA
EIANIFLEGD RLAIESGMPI IVAECLDGNE AKNHLWLETL KLPTLNPQGE FVGVIGMTRN
ISKHKAVEEQ LTLATNVFKN SVEGVVVTDR HGNITDVNGA FFEITGYVRE ELLGQNPRIF
SSGRHDKAFF DKLWNALLAN GKWNGEIWNR RKNGTIFPQN ITISTIYDEV GDVRYFVAVF
ADISAQKENE AQLTHLAYFD PLTHLPNRMK FMMQLKQEVR QAKRLNLQLA TVMIDVDLFK
HINDSFGHSI GDEMLVELAK RLRSQVGDQD VLSRIGGDEF VALISGIDNN EDATVAINQL
RQVFEQPFIV STGDHLRLTA SMGVSLYPND GTDADTLLRN ADAAMYRAKN DGRNNYAFYT
ESLTQQSFEH LKLQSALYGA IEQNALYLMY QPKLDLVSRK TVGFEALLRW HDPQLGLISP
AVFIPVAEKI GLIHEIGLWV LETACRQGMR WLSEGKHFGR IAVNVAGQQL QRSSFVDDVK
RVLAETGLPA KHLELEVTES VMMQNPDLAI RDLKLLGDLG IELSVDDFGT GYSSLNYLKK
LPIHKLKIDQ SFVRDIPFDT NNTAIAKAVI ALGHALKLDI IAEGVETKEQ ADFLQQNQCD
QAQGYLFSRP QLPEDLDAFL S
|
|---|
| |