Gene Sbal_1195 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbal_1195 
Symbol 
ID4844020 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS155 
KingdomBacteria 
Replicon accessionNC_009052 
Strand
Start bp1377699 
End bp1378277 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content45% 
IMG OID640118414 
ProductRNA polymerase sigma factor RpoE 
Protein accessionYP_001049582 
Protein GI126173433 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000180886 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGGAC AATTAAGTGA TCAACAATTA GTTGAGCGCG TACAACAAGG TGATAAAAAC 
GCTTTTAACC TGTTAGTGCT TAAATATCAA AGTAAAGTCA TTAGCTTGAT ATCCCGTTAT
GTACGGAACC AAGCGGACGT TGCCGATGTC GCACAGGAAG CGTTTATCAA AGCTTATCGA
GCTTTGCCAA ACTTTCGCGG TGAAAGTGCA TTTTATACTT GGTTGTACCG CATCGCAGTA
AACACTGCGA AGAATTATCT CGTATCACAG GGGCGCAGAA CGCCCGCTAA TGATGTTGAT
GCAGAAGATG CCGAATATTA TGAAGGCAGT GACGCGCTGA AGGAGTTCGC CTCCCCAGAA
CGGCTATTGT TATCGGAAGA AATCAAAAAA GTGATTTTCG ATACCTTAGA AACGCTGCCA
GAAGAATTAC GAATGGCCAT CTCGTTGCGT GAACTTGATG GAATGAGTTA CGAAGATATT
GCCATAGTCA TGGATTGCCC CGTAGGGACC GTAAGATCGC GTATCTTCCG AGCTCGAGAG
GCAATCGATA AAAAGCTCCA GCCGTTGCTG GAAGCCTAA
 
Protein sequence
MSGQLSDQQL VERVQQGDKN AFNLLVLKYQ SKVISLISRY VRNQADVADV AQEAFIKAYR 
ALPNFRGESA FYTWLYRIAV NTAKNYLVSQ GRRTPANDVD AEDAEYYEGS DALKEFASPE
RLLLSEEIKK VIFDTLETLP EELRMAISLR ELDGMSYEDI AIVMDCPVGT VRSRIFRARE
AIDKKLQPLL EA