Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_4004 |
Symbol | |
ID | 7086220 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | - |
Start bp | 4764550 |
End bp | 4766601 |
Gene Length | 2052 bp |
Protein Length | 683 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 643462879 |
Product | type IV pilus secretin PilQ |
Protein accession | YP_002359900 |
Protein GI | 217975149 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4796] Type II secretory pathway, component HofQ |
TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0761872 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATCTT CTGCCGCGAT AAAAGTCCCG TTATTATCTT CAGGCTTAAT CAAGTCTGTC ATAGGGATCG CACTGGTATT TGGAATTTTG CCATCGAGTT TTGCGGCAAA TCGATTAATG GATGTTAAAT ACCACGCCTT GGTTGACCAT CAATTGGAGC TAGAGCTGGT CTTTGAAGAT GCGGTCACTA CGCCTGCAAT AGACTCAAAT GCCTCGCCCG CAGAGCTAGT GCTGACCTTC GATAACACTA TCTCAGGTTT ATCTAAGGAT CGTTTACCTA TTAATCAGGT TGGGGTGACA GACATCACCA CTGAGCAGCA AGATACTCGT CTTAAAGTCA TCTTAGGTAT GTCCAAAGTG AAACCTTACC AAGGTTCTGT CATGGGCAAT TCATATCGAT TAACAATTAA CGATGAAGTG GCGGGTACTC AAGCCCAAGC TGAAAACCCT TTCGTTAACA GCATTAAAAA TATCGATTTT CGTCGTAATG ATAATGGTGG CGGTGAGCTA TTAGTCTATC TAAATAATCG CTCGGTTGCG GCTAATGTCG AGCAAGTGGG CGCTAAGCTC GAAGTGAAGT TATATAACAC AGATATTAAT AACGATCTTC TGTATGTTAT GGATGTGAAA GATTTCTCCA CGCCAGTAAA AAGCTTCGAG ACATTTAAAG AAGATTTAAC GGCGCGTATT GTCGTCGATA TTACGGGTGA GTATGAATTC ACTTACAAGC AAGAAGATAA CCTCTTTAGA CTCTCAATGA ATAAAGTCGA GAGGGCCGCC GCCAAGAAAG ATGTTAAAAA ATACAATGGC CGGACTTTGT CGCTTAACTT CCAAAATATC CCAGTGCGCA CTGTGTTGCA GATCATCGCC GACTATAATA ACTTTAACTT AGTCACCAGC GATACTGTGG AAGGCAATAT CACCTTAAGA TTGGACGATG TGCCTTGGGA TCAAGCTTTA GAATTAATTC TGCAAACCAA AGGATTAGAT AAGCGTATCG AAGGCAACAT CTTAATGGTG GCGCCGAGCG AAGAACTGGC AATTCGTGAA AGCCAGAACC TCAAAAACAA ACAAGAGGTT AAAGAGTTAG CACCGCTCTA TTCTGAGTAC TTGCAAATTA ACTACGCTAA AGCGGTCGAT ATTGCTGAGT TATTGAAAAG CGCGGATTCA AGCTTACTTT CACCACGCGG TTCAGTCGCG GTCGATGAAC GTACTAACAC AGTGTTAGTG AAAGATACGG CTGAAACGAT TGAGAACATT CACCGTTTAG TCGAAGTGCT CGATATCCCC ATCCGCCAAG TGTTGATCGA GTCACGTATG GTGACAGTGA AAGATGATGT CTCCGAAGAC TTAGGTATTC GTTGGGGCGT CACAGATCAA CAAGGTAGTA AGGGAACCTC TGGCACATTA GAAGGTGCAC AGAGTATTGC CAATGGGATT ATTCCCACTC CAGATCAGCG TTTGAACGTT AACTTACCCG CGGCAGCCAC CAATCCAGCG AGTATTGCCT TCCATGTCGC TAAATTGGCG GACGGTACCA TTCTTGATTT GGAATTAAGT GCGCTAGAGC AAGAAAACAA AGGTGAAATC ATCGCTAGCC CTCGTATCAC CACCTCTAAC CAGAAGGCGG CTTATATTGA GCAAGGTGTC GAGATCCCTT ATGTGCAGTC GACTTCGAGT GGTGCAACGT CAGTCACGTT TAAGAAGGCG GTGTTGTCTC TACGGGTTAC ACCACAAATT ACGCCCGATA ACCGAGTCAT TTTAGATTTA GAAATCACTC AAGATTCTCA GGGTAAAACC GTTGATACTC CAACGGGTCC CGCAGTGGCT ATCGATACTC AACGCATCGG CACCCAAGTG CTCGTTAATA ACGGCGAAAC CATAGTGCTT GGCGGTATTT ATCAGCAAAA TCTGATCAGC CGTGTGAGTA AAGTACCAAT TCTAGGTGAC ATTCCTCTGG TTGGTTTCCT GTTTAGGAAC ACAACAGACA AAAATGAGCG TCAAGAGCTA CTTATTTTCG TCACCCCCAA AATAGTCGGT GAGAAGATCT AA
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Protein sequence | MKSSAAIKVP LLSSGLIKSV IGIALVFGIL PSSFAANRLM DVKYHALVDH QLELELVFED AVTTPAIDSN ASPAELVLTF DNTISGLSKD RLPINQVGVT DITTEQQDTR LKVILGMSKV KPYQGSVMGN SYRLTINDEV AGTQAQAENP FVNSIKNIDF RRNDNGGGEL LVYLNNRSVA ANVEQVGAKL EVKLYNTDIN NDLLYVMDVK DFSTPVKSFE TFKEDLTARI VVDITGEYEF TYKQEDNLFR LSMNKVERAA AKKDVKKYNG RTLSLNFQNI PVRTVLQIIA DYNNFNLVTS DTVEGNITLR LDDVPWDQAL ELILQTKGLD KRIEGNILMV APSEELAIRE SQNLKNKQEV KELAPLYSEY LQINYAKAVD IAELLKSADS SLLSPRGSVA VDERTNTVLV KDTAETIENI HRLVEVLDIP IRQVLIESRM VTVKDDVSED LGIRWGVTDQ QGSKGTSGTL EGAQSIANGI IPTPDQRLNV NLPAAATNPA SIAFHVAKLA DGTILDLELS ALEQENKGEI IASPRITTSN QKAAYIEQGV EIPYVQSTSS GATSVTFKKA VLSLRVTPQI TPDNRVILDL EITQDSQGKT VDTPTGPAVA IDTQRIGTQV LVNNGETIVL GGIYQQNLIS RVSKVPILGD IPLVGFLFRN TTDKNERQEL LIFVTPKIVG EKI
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