| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3896 |
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| Symbol | dapF |
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| ID | 7086659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | - |
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| Start bp | 4622581 |
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| End bp | 4623408 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 643462773 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_002359794 |
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| Protein GI | 217975043 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0191841 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATCCAAT TCACTAAGAT GCACGGACTG GGCAACGATT TTATGGTAGT CGATGGGGTC
ACGCAGAACG TGTTCTTTTC GCCTGAGCAG ATCCGCCGTT TAGCCGACCG TAACTTTGGC
ATAGGTTTCG ACCAACTACT CTTAGTTGAG CCGCCCTATG ATCCCGATTT AGATTTTCAT
TATCGCATCT TCAATGCCGA TGGCACTGAA GTCGAACAAT GCGGCAATGG CGCCCGCTGT
TTCGCTCGTT TTGTGCGTAA TAAAGGCCTG ACAAATAAGA GCAAAATCCG TGTCAGTACT
TCGTCTGGCA AGATGACTCT GCGCTTAGAG CGAGACGGTA CTGTTACCGT GAATATGGGC
GTGCCGATCC TCGAACCGAG TCAGATCCCC TTCAAAGCCA AGAAACCTGA AAAAACCTAT
TTACTGCAAA CACCGATGCA AACCTTTTTA TGTGGCGCGG CTTCTATGGG TAATCCCCAT
TGCGTGCTCG ACGTTGAAGA TGTGGCGAGT GCTTCTGTTG CTGAAATTGG TGCCATGCTC
ACTAAGCATG AGCGTTTTCC GCGCGGCGTG AATGTGGGGT TTATGCAGGT CGTAGACTCA
GGCCACATTA AGCTGCGGGT GTATGAGCGC GGCGCGGCCG AAACCTTGGC CTGTGGTACC
GGCGCATGTG CAGCTGTAGT TGTAGGCCAA GTGCAAGGGA AGCTCGGCCA GCAAGTGCGG
GTGGATTTAC CCGGCGGCAC CTTAACCATC AACTGGGAAG GCGAGGGTAA ACCTTTGTGG
ATGACGGGCC CCGCGCAGCA CGTTTACGAT GGACAAATTC AGTTATGA
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| Protein sequence | MIQFTKMHGL GNDFMVVDGV TQNVFFSPEQ IRRLADRNFG IGFDQLLLVE PPYDPDLDFH
YRIFNADGTE VEQCGNGARC FARFVRNKGL TNKSKIRVST SSGKMTLRLE RDGTVTVNMG
VPILEPSQIP FKAKKPEKTY LLQTPMQTFL CGAASMGNPH CVLDVEDVAS ASVAEIGAML
TKHERFPRGV NVGFMQVVDS GHIKLRVYER GAAETLACGT GACAAVVVGQ VQGKLGQQVR
VDLPGGTLTI NWEGEGKPLW MTGPAQHVYD GQIQL
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