Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_3868 |
Symbol | |
ID | 7088903 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | + |
Start bp | 4595177 |
End bp | 4596448 |
Gene Length | 1272 bp |
Protein Length | 423 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 643462745 |
Product | type II secretion system protein |
Protein accession | YP_002359766 |
Protein GI | 217975015 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1459] Type II secretory pathway, component PulF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0000419174 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCTACGG CAACGACCAC AAGAAAGCCT CGCACCAAGA AAGCCGAGCA AAAAAGCCAA TCCAAAATCT ATACTTTCGA ATGGAAAGGG GTTAATCGCG ACGGCAAGAA AACCGCAGGT GAGCTCAGGG GCGCAACCGC AGCCGAAATC CGTAGCCAGT TAAAATCCCA AGGCGTTACC CCAAAGAGTG TTCGTAAACA GTCCTCTGCG CTATTTAAGT TAAGTGATCC AAAAATCACC CCTATGGATA TAGCTATGAT GACTCGCCAA GTTGCGACTA TGCTAGCGGC GGGCGTACCT TTAGTGACAA CTATTGAGCT ACTTGGCCGC GGTCACGAAA AAGCTAAAAT GCGAGAACTA TTAGGAAATA TCCTCAGCGA AATTCAATCA GGTATTCCCT TATCCGATGC TATGCGCCCC CATAGGCGTT ACTTCGATGA ACTTTATGTT GACCTAGTTG CAGCAGGCGA GCACTCAGGC TCACTGGATT TGGTTTTTGA TCGCGTAGCT ACCTACAGAG AAAAATCAGA AGCACTGAAA TCAAAAATTA AGAAGGCTAT GTTCTACCCT GCTGCAGTTG TCATAGTCGC AATCTTAGTC ACCTCATTAT TATTATTGTT TGTGGTGCCT CAATTTGAGG AGATTTTTAA GGGGTTTGGC GCTGAGCTCC CCGCCTTTAC TCAATTAGTA CTGCATATTT CACGCGGCTT ACAATCCTCT TGGTATATAT TTTTAGCAGC TATCGGCGGC GGAGTATTTT TGTTCGTTCG AGCCCACCGA AACTCACAAA TGGTGAGAGA TCGAGTAGAC GAAGCTGTGC TTAAAATCCC AGCCATTGGG CCTATTTTAC ACAAAGGTGC CATGGCTCGA TTCGCTCGTA CTTTAGCAAC CACTTTCGCC GCCGGCGTGC CGTTGATTGA TGGTTTAGAA TCCGCAGCTG GCGCATCGGG TAATGCAGTC TATCGAAAAG CGATTTTAAA AATTCGTCAA GAAGTCATGG CGGGGATGCA GATGAATGTG GCTATGCAGA CCACTGGACT TTTCCCTGAC ATGTTAGTGC AAATGGTGAT GATAGGCGAA GAATCAGGTT CACTAGATAA CATGCTCAAT AAAGTCTCTA CTATCTACGA AATGCAAGTA GACGATGCCG TAGATGGCTT ATCAAGCCTG ATAGAACCGA TTATGATGGT GGTCATCGGC ACTGTCGTCG GCGGTTTAAT TGTTGCTATG TACTTACCTA TCTTCCAGAT GGGTAAAGTT GTTAGCGGCT AG
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Protein sequence | MATATTTRKP RTKKAEQKSQ SKIYTFEWKG VNRDGKKTAG ELRGATAAEI RSQLKSQGVT PKSVRKQSSA LFKLSDPKIT PMDIAMMTRQ VATMLAAGVP LVTTIELLGR GHEKAKMREL LGNILSEIQS GIPLSDAMRP HRRYFDELYV DLVAAGEHSG SLDLVFDRVA TYREKSEALK SKIKKAMFYP AAVVIVAILV TSLLLLFVVP QFEEIFKGFG AELPAFTQLV LHISRGLQSS WYIFLAAIGG GVFLFVRAHR NSQMVRDRVD EAVLKIPAIG PILHKGAMAR FARTLATTFA AGVPLIDGLE SAAGASGNAV YRKAILKIRQ EVMAGMQMNV AMQTTGLFPD MLVQMVMIGE ESGSLDNMLN KVSTIYEMQV DDAVDGLSSL IEPIMMVVIG TVVGGLIVAM YLPIFQMGKV VSG
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