| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3652 |
|---|
| Symbol | nrfA |
|---|
| ID | 7089586 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 4330737 |
|---|
| End bp | 4332140 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 643462532 |
|---|
| Product | cytochrome c552 |
|---|
| Protein accession | YP_002359553 |
|---|
| Protein GI | 217974802 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3303] Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit |
|---|
| TIGRFAM ID | [TIGR03152] formate-dependent cytochrome c nitrite reductase, c552 subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00563536 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0000468517 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAGA AGATGACAGG TAAGTCCTTT GCACTGAGTG CACTGGTTGC CGCCAGCTTC
ATGGCGGCGG GCGCAATGGC GAGTGATAAA ACAGAGCCTC GTAACGAAGT TTATAAAGAC
AAATTTGCTA ATCAATACGC CAGTTGGCAT GACACAGATA AAAGCACTGA GAATACCGAT
GTGTTGGCCT CGGATCCAAG TTTAGTCGTG CTGTGGGCAG GTTATGGTTT TGCTAAAGAT
TACAACGCAC CACGTGGTCA CATGTATGCC ATTACGGATG TGCGTAACAC TCTGCGTACT
GGCGCACCCA CCAACGCGGA AGATGGCCCA ATGCCGATGG CTTGTTGGAG CTGTAAGAGC
CCAGATGTGC CGCGTTTGAT TGAAGAACAA GGCGAAGATG GTTACTTCAA AGGCAAATGG
GCAAAAGGCG GCCCAGAAGT GGTGAACACC ATAGGCTGCG GTGACTGCCA TGAAAAAGGC
ACGCCAAAAC TGCGTATATC CCGTCCCTTT GCTGAACGTG GTATGGAAGC ATTAGGTACA
CCCTTTGCCA AAGCGTCTAA AAAAGACAAG CAATCAATGG TCTGTGGTCA GTGCCACGTT
GAATACTACT TCGAGAAAAA AGAAGGCAGA AAAGGTTTCG TTAAATTCCC TTGGGATATG
GGCACAACCG TTGAGCAAAT GGAAACCTAT TACGACGGTA TTGAGTTCTC AGATTGGACG
CATGCGCTGT CTAAAACCCC TATGTTAAAA GCGCAGCATC CTGGCTATGA AACTTGGAAA
CTCGGTGTTC ATGGTAAGAA TGATGTGAGC TGTGTTGATT GTCACATGCC AAAAGTGACC
AACGACAAGG GTCGTAAGTA CACAGATCAT AAAGTGGGTA ACCCATTTGA TCGTTTTGAA
GAAACCTGCG CGACGTGCCA CAGCCAAAGT AAAGAGTTCT TAGTCGGCTT GACCAACGAA
CGTAAAGCTA AAGTGAAAGA GTTAAAAGGC CGCGCCGAAG CGCAACTGGT GAAAGCGCAC
TTTGAAGCCG CAGCCGCTTG GAAAGCCGGT GCAACTGAAG CGGAAATGAA GCCAATTCTA
ACCGATATCC GTCATTCACA ATGGCGTTGG GACTATGCGA TTGCTTCACA CGGCGCTGCT
GCGCATGCCC CTGAAGAAGT CTTACGTATC CTAGGCACAG CGGTAGATAA AGCGGCAGAT
GCGCGGGTTA AATTAGCGCA ATTGTTAGCG AAAAAAGGCA TCACAGATCC TATCGCGATC
CCAGATATTT CTACTAAAGC CAAGGCACAA GCCGCTTTAG GTATGGACAT GGAAAAAATG
AATGCAGAGA AAGAAGCATT TAAGAAAGAC ATGTTACCTA AGTGGGATGA AGAAGCGAAA
AAACGCGAAG CCACTTATAA ATAG
|
|---|
| Protein sequence | MMKKMTGKSF ALSALVAASF MAAGAMASDK TEPRNEVYKD KFANQYASWH DTDKSTENTD
VLASDPSLVV LWAGYGFAKD YNAPRGHMYA ITDVRNTLRT GAPTNAEDGP MPMACWSCKS
PDVPRLIEEQ GEDGYFKGKW AKGGPEVVNT IGCGDCHEKG TPKLRISRPF AERGMEALGT
PFAKASKKDK QSMVCGQCHV EYYFEKKEGR KGFVKFPWDM GTTVEQMETY YDGIEFSDWT
HALSKTPMLK AQHPGYETWK LGVHGKNDVS CVDCHMPKVT NDKGRKYTDH KVGNPFDRFE
ETCATCHSQS KEFLVGLTNE RKAKVKELKG RAEAQLVKAH FEAAAAWKAG ATEAEMKPIL
TDIRHSQWRW DYAIASHGAA AHAPEEVLRI LGTAVDKAAD ARVKLAQLLA KKGITDPIAI
PDISTKAKAQ AALGMDMEKM NAEKEAFKKD MLPKWDEEAK KREATYK
|
|---|
| |