| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3117 |
|---|
| Symbol | |
|---|
| ID | 7087895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 3694020 |
|---|
| End bp | 3694646 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 643462001 |
|---|
| Product | anti sigma-E protein, RseA |
|---|
| Protein accession | YP_002359025 |
|---|
| Protein GI | 217974274 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3073] Negative regulator of sigma E activity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.10533 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0310587 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAT TAGGTCAAGA ATGGGTATCT GCCGCAGTCG ATGGAGAGAC TGATGCGCAG
ACCATGGCAG AGTTATCTGC TGATACACAT TCACATGATA AATGGCATAA CTATCATATG
ATAGGCGATG CCATGCGTGG CGAGTTGCCG CAGAATATTG TGTTAGATCT CTCTGCTAGC
ATTGCCGCCG CCATTGAGCT TGAGCCAGCG ATAGTTGCGC CTAAGCATCA TGCGTCTAAG
GTTGCTGCAC CTGTAACCCC GCAAATTGCC GCCAATGCGC AGCAAAACCG CGTCGTACCT
TTGTTTAAGC AATTTGGCCA ATATGCCATT GCTGCGACGG TTGCTATGTT TGCGATTGTT
GGTGTGCAGA ATTACAATCA GAGCGCCGAT GATGCCGCGT CACCATCGCC CGTATTGATT
ACCAGACCGC TAATTGGTAG CGCATCACCT GTGAGCCTAC AAACGGGTCC AGTTCAACAG
AATCAAGGTT ATACCAATGA TCAGGTGAAC GAGCAGCGTC GCCGAATTAA TACTTATATT
CAAGATCATA TGTTGCAACA ACGATTGAAT ACCGGTGCGG TTGTAGAGGA CAATACCGAG
GTCGTACCCG TTCCGGTCAA TCAATAA
|
|---|
| Protein sequence | MDKLGQEWVS AAVDGETDAQ TMAELSADTH SHDKWHNYHM IGDAMRGELP QNIVLDLSAS
IAAAIELEPA IVAPKHHASK VAAPVTPQIA ANAQQNRVVP LFKQFGQYAI AATVAMFAIV
GVQNYNQSAD DAASPSPVLI TRPLIGSASP VSLQTGPVQQ NQGYTNDQVN EQRRRINTYI
QDHMLQQRLN TGAVVEDNTE VVPVPVNQ
|
|---|
| |