| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_3022 |
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| Symbol | |
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| ID | 7088931 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | - |
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| Start bp | 3572907 |
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| End bp | 3575954 |
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| Gene Length | 3048 bp |
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| Protein Length | 1015 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 643461906 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002358930 |
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| Protein GI | 217974179 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAAAG GTATTCTCTT TCCGTTAGTG CAAAATGCGG CTTTGTTGCT GGCGTTGGTA
TTTTTGTACG ACGTGATCCC TAAAAAGCAT CAGCGGCAGT ATTTCTTACT GTGGCGTATC
ATTATTGGGA TGCTCATCGG TGGTATTGGT ATCACCATCA TGAGCACGCC TTGGATATAT
CAACCGGGCG TTTTTTTCGA TACTCGCTCG GTTATCCTCT GTATTTCAGG CCTCTTTTTC
GGTGGTTTGC CGACCTTTAT TGCTGTGGTG ATGACGGTGC TATATCGCAT CAGTATTGGT
GGCGCGGGGA TGTGGATTGG CGTCGGCGTG ATAGTGTCAT CCGGGTTAAT TGGGGTGATC
TGGCGTCAAT ATCGTAAATC CTATTTAGCG AACATTTCAG GTAGAGAAAT CTTTCTCTTT
GCCTATGCAG TCCATATCGT TATGTTGTTG TGGTTCGTAT TTTTACCCAA TGGCATCGGA
ATGCCCTTGC TCGAACAAGT CACCCTACCT GTGCTCACCA TTTTCCCCAT TGCGACTTGG
CTACTGAGCC GCCTGTTGTC ACGGCGTTTT GAGTTAGAAC GTGATGAACA AATTCGTCTA
CAGGACGATT TTCTATTTCG CAGCCAATTC AACGCGGGCA ACATTGGTAT TGCGATAACG
GGGATTGACC AAAAGTGGAT AAAGGTGAAT CCACGTTTAT GCCAAATGCT CAAATATTCA
GAGGCTGAAT TGCTGCGGAT GACGTGGGCG CAAATCACCC ATCCCGATGA TTTAGAAACC
GATGCGCTGA AATTTGAGCT TATGTTACAA GGCGATATCG ATAATTACGA GATGGATAAG
CGTTTTATCG TTAAAGACGG CAGCGTGGTT TACACCCATA TGACAGTCGC CTGCAAACGG
GGTGGCAATA ACGCCGTGTT GCTTGTTATT GCTGGATATT TAGATATCAC TGCCCAAGCC
TTTGCCGACC AAGAGGTACT TGCTAGTCGT GAGCAACTCG AACTGGTGCT GAGCAGTAGC
GATCTTGGGG TATGGGATTG GGATATTCGT CATGATCGTA TCGAACGTAA CGCCCGCAGC
GCCGATATTC TCGGCTGCGA TGTGGATATG CTCAACGCCA ACAGTCGCCA ATGGATGGAC
GCGATTGTCG CCGAAGACAG ACCCAAAGTG TTGCACTCGA TTGAGGCCCA TATTCGCGGC
GAAACGGCGC AACATAAGAT GGAATATCGC CTAAATACAC TCAATCGCAA AGTGCGCTGG
ATTTTAGACA CAGGTAAAGT GGTGAGCCGC GACGCCAACG ATAATGCCCT ACGGATGTGC
GGAACCTATA CCGATATTAC CGATGCAAAA CTTATCGAAG AATCATTGAA ATTGTCGGCG
CTGGTATACG ACAACAGCTC AGAAGCTATG AGTGTACTCG ATGAAAAGGG CGTGATCATT
ACCGTTAATG CCGCCTTTAG TGTGATGACC GGCTATCGTG AATTTGAAGT ACGGGATCAA
CATATTCGGC TGCTTTATTG CGACCTCAAT GGCCGTGATT TTTACACCAA AATGAACAAT
GAGATCCGTG AAAAGGGCCA ATGGCAAGGG GAAATGTGGC AGCGGCGTAA AAATGGTGAG
GAATATGTCA TCTGGTTAAC CATCAATACC ATCAATGACA AAGAAGGCCA TCCCTATCGG
CGGGTGGCGC TGTTTTCTGA CATTACCGAC AAGAAGCAAA ATGAGCATCT CATCTGGAAG
CAAGCAAACT ACGATACGCT GACGGGCTTA CCCAATCGGC GCATGTTATT GGAGTATTTA
AGCAGCGAAG TGAAAAACGC TGACCGTAAT CGCAATCACT TTGCCTTATT GTTTTTGGAC
TTAGATTTCT TTAAAGAAGT GAATGACACC TTAGGCCATG CCATGGGCGA TTTACTGCTG
ATAGAAACTG CGAGCCGCTT GAAATCCTGC GTGCGTGATG CCGACGTCGT GGCCCGTCTT
GGCGGCGATG AATTTACTGT AGTGTTAAGT TCGATGGAAG ATCATAAGGG TATTGAGCGC
GTTGCCGAGA ATATTCTGCG GCGAATTGCC GAGCCCTATG TGCTAGGTGA AGAAACGGCT
TACATCAGCG CCAGTATTGG GATCACTTTG TATCCCGATG ATTCGACCAG TATTGAAGGA
CTGCTTAAGC ATGCGGATCA GGCGATGTAT GCGGCGAAAG ATCAAGGGCG CAATCGCTTC
AACTATTTCA CCCCGTCGAT GCAGGAATAC GCCAAATACC GCATGCGCTT GATCCAAGAT
TTGCGTCAAG CGGTCGCCAA TAAAGAATTT GAACTGCATT ATCAGCCGAT TGTTGCTTTA
GCGACGGGTG AAGTGACTAA GGCCGAAGCC TTGATCCGCT GGCACCATGC CGAGCGTGGC
GCTGTGTCAC CCGCCGAGTT TATTCCGGTG GCGGAAGACA CGGGTTTGAT TGTTGAAATC
GGTAATTGGG TGTTTGAGCA AGCCGCGCGT CAAAGTGCGG CATGGCGCCA TGAATTAGGG
GTTGAAATCC AAATCAGTGT CAACAAATCC CCAATCCAAT TTCGCGATGA AGGCACGCTG
CTCAATGATT GGCTGAAGTT ATTGCAAGAT CTCAATATCA CGGGTGCGGG CGTGTGCGTT
GAAATTACCG AAGGCTTGTT ATTGGACGCC AGTATGGGCG TGACCGAAAA ACTACTGGCC
TACCGTGATG CGGGCGTGCA AGTGTCGCTG GACGATTTTG GTACTGGCTA CTCGTCACTC
GCCTATCTGA AAAAGTTTGA TATCGATTAT CTTAAAATTG ATCAATCTTT TACCCGCCAT
ATTGATACCG ATTCAAACGA TCAAATTCTC TGTGAGGCGA TTATCGTGAT GGCCCACAAG
TTGGGGATGA AGGTGATTGC CGAAGGTGTC GAAACCGAGG CGCAGCGCCA AGTGTTGTTG
GCGGCAGGTT GTGACTATGG CCAAGGTTAC TTGTTCTCAA GACCTGTGCC TGCCGCTGAA
TTTACCCAAA AATACCTGCA GGATCCGCCG TTAGTCTCCC GTGTCTGA
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| Protein sequence | MDKGILFPLV QNAALLLALV FLYDVIPKKH QRQYFLLWRI IIGMLIGGIG ITIMSTPWIY
QPGVFFDTRS VILCISGLFF GGLPTFIAVV MTVLYRISIG GAGMWIGVGV IVSSGLIGVI
WRQYRKSYLA NISGREIFLF AYAVHIVMLL WFVFLPNGIG MPLLEQVTLP VLTIFPIATW
LLSRLLSRRF ELERDEQIRL QDDFLFRSQF NAGNIGIAIT GIDQKWIKVN PRLCQMLKYS
EAELLRMTWA QITHPDDLET DALKFELMLQ GDIDNYEMDK RFIVKDGSVV YTHMTVACKR
GGNNAVLLVI AGYLDITAQA FADQEVLASR EQLELVLSSS DLGVWDWDIR HDRIERNARS
ADILGCDVDM LNANSRQWMD AIVAEDRPKV LHSIEAHIRG ETAQHKMEYR LNTLNRKVRW
ILDTGKVVSR DANDNALRMC GTYTDITDAK LIEESLKLSA LVYDNSSEAM SVLDEKGVII
TVNAAFSVMT GYREFEVRDQ HIRLLYCDLN GRDFYTKMNN EIREKGQWQG EMWQRRKNGE
EYVIWLTINT INDKEGHPYR RVALFSDITD KKQNEHLIWK QANYDTLTGL PNRRMLLEYL
SSEVKNADRN RNHFALLFLD LDFFKEVNDT LGHAMGDLLL IETASRLKSC VRDADVVARL
GGDEFTVVLS SMEDHKGIER VAENILRRIA EPYVLGEETA YISASIGITL YPDDSTSIEG
LLKHADQAMY AAKDQGRNRF NYFTPSMQEY AKYRMRLIQD LRQAVANKEF ELHYQPIVAL
ATGEVTKAEA LIRWHHAERG AVSPAEFIPV AEDTGLIVEI GNWVFEQAAR QSAAWRHELG
VEIQISVNKS PIQFRDEGTL LNDWLKLLQD LNITGAGVCV EITEGLLLDA SMGVTEKLLA
YRDAGVQVSL DDFGTGYSSL AYLKKFDIDY LKIDQSFTRH IDTDSNDQIL CEAIIVMAHK
LGMKVIAEGV ETEAQRQVLL AAGCDYGQGY LFSRPVPAAE FTQKYLQDPP LVSRV
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