Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_2838 |
Symbol | |
ID | 7088587 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | + |
Start bp | 3331815 |
End bp | 3335042 |
Gene Length | 3228 bp |
Protein Length | 1075 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 643461724 |
Product | transcriptional regulator, CadC |
Protein accession | YP_002358748 |
Protein GI | 217973997 |
COG category | [K] Transcription |
COG ID | [COG3710] DNA-binding winged-HTH domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.199766 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.195433 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGACA GCACATTTTT CTTTGGTGAA TGGCAAATCA ATCCCAGCGC CAATAGTCTG CTCCTTGGCA AACAAGTCAA ACAACTTGAG CCCAAGGCGA TGGATGTGCT GTTATTTCTC TGCCAACGGG CGGGCGAAGT CGTCAGCAGT GATGAAATAG TCAGCCACTG CTGGCCGGGT GTTGATACTG GCGATAACCC ACTACACAAG ATTATCAATC AGTTACGTAG AGCATTAGGC GATAGCGCCA CCGATCCCAC CTATATAGAA ACCATACGCA AACGCGGCTA TCGCACCTTA GCCGAAGTGC GTTTTCCTAT CGGCCACGAA GCCACCGCCA GCCCGCAAAG TTGGCAAGGC GGCTCGCCCT TTCCGGGTCT GCAAGCCTAT AGCGCTAACT ATGCCGAGGT GTTTTTTGGT CGCAGTGAAC AAATCAGCAC TTTGCTTAAC CGTATCTGCC AGCAAATCAT CTATGGTCGT GCCTTCTGTC TGGTTTTAGG CCCAAGTGGC AGCGGTAAAT CCTCCCTGAT AAATGCGGGT GTTGTACCCA ATTTAATGAA GGGCGGCGGC TATAACGGCA TTGGCGTTGC GTCATTCAGC AGCTTAGATT TTGCCGATGT GAGTAAAGGG CAACTGCTAA CCGATCTTGC CAGCGCTATG CTCGACTGGG AAATCAATGA CACGCCAGTG TTCGAAGGCA TGAGCGCCGA TACACTGGCG GTTCAACTCA TCGAAGATAT CCAAGGCGTA ATCAACCAGT GCACCCAAGC ACTCAAGGTT CAGTCCTTTA CTCAGCCGTT TTTTGCCTTG TTTATCGACC GATTAGAAGT GTTGCTCTCA TCACCGCTAT TTAGCGACAC CGAGCGCACA GTATTTGTTG AACTGCTGGA ACAACTCGCC ACCTCTAAGG CCGTGATTAT TATCAGTGCC TGTCGCAACG ATTTTTACCC TTTACTTGTG GGCTACCCAA GCTTAATGGC CGGCAAATCC CGCGGCGCCC ACTTTGACTT AGCGCCGCCG ACACGCACTG AACTGTTGCA AATGATCCGC CTGCCTGCGG TGGCCGCCAA CTTAAGCTGG GAAGTTGACA GTGAAACCGC GATGCCGCTC GATGAAATGC TCTGCAGCGA CGCCGCCAGT AACCCGGATG CGCTGCCCAT GTTGCAATAC ACGCTGCAGG CCTTGTATTT GCAGCGCAGC GCCGACGATA AGTTATTAGT CTCGGTTTAT CATGCCCTTG GCGGTATTGA AGGGGCGATT GGTAAAAATG CCGAGCAAGC GATTTCCCAT TTAAGCGATG TCGAAAAAGC CAGTCTGCCA CGGATTTTAT CCCTGTTAGT CACCCTGCGC GAAGATGAAA AGTCCATCAC CAGCCGCACC GCCCGCTGGT CGCAGTTGCA AAGCACCGCC GAAATCGCCC TAGTGCAAGC CATGGTCGAT AGCCGCTTAT TCGTGTCGCA TCTGCAAAAT GGTGAACCCT GTTTTAGCAT CGCCCACGAA GCCCTGCTGC ACCGTTGGCC ACGGGCGACG GCTTGGATTA ACGAACATAG CGACAGCTTG AGTATTAAGA GTCGCCTACA GCATCTTTCA ACACGCTGGC TCAGCGAAGC CAAACACAGC GCCTATCTAC TCGCTGAAGG TAAACCTTTA AAAGAAGCCC AAAGCCTCAG CCAAAATCCG TTATTCGACT TAGACGATCC CGAAACCGCC TTTATCGCAG CCTCCACCAA ACGCGCCAAT ATGTTGCGCT GGACGAGGCG CATCACCGTC GCCCTGCTGT GCGTACTCAC CTTAACCTCA GTCATTATGA GTGTGCGCAG CATAGAAGCT GAAAAACTCG CCCTGCAAAA ACGCCTCGCC GCCGAAGATT TACTCGGTTT CATGGTGGGC GACTTCGCCG ACAAGATGCG CGGCATCGGC CGAATGGACT TACTCGACGG GATCAGCAAT AAAGCACTGG AATATTTCAG TGATTTCTCC AGCCCAGACG ATGAAAAGTA CTTAAGCTTC GACGCCCGCT TCCAGCATGG GCAAACCTTA GAGGCCATGG GCGAAGTCGC CTATTCACGC AATAAAATCG ATGAAGCCCG CAGCGCCCTA ATCGCAGCGC AGGAAAAAAT GCTGCCGCTG CTCGAATTGC AGCCGGAAAA CTTAGCCCTG CTAAAAACCT TAGGTGCCAA TGCCTTTTGG TTGGGTCAGC TTAAATATGA TGTCAAAGAT TGGACGGCAT CGCACCCCTT CTTCGAGCAG TACTTAGCTT ATAGCCAAAC CATGTATGCC CTAGCGCCAG AGGATAAAGA TGCGCTCATG GAGCTATCCT ATGCCCATAA CACCTTGGGC TCAGTGTCGA TGAAACAACA GGACTTTGCC AAAGCGCAGC AAGATTTCGA GGAGTCACTA CGACTTAAAC TATTGGCGCT GGCCAAAGCC CCCGAGGATA GTCAACTGAT TGCCGATGTG GCTAATGCGC GTTCTTGGTT AGCAAGTGCA GCGCTCTCAC AAGGCGATTT GCTATCGGCG ATAAATATTC ATATTCAACT CCAACAAGAG CTGAGCAAAA ATATTAATCA ACCGTATATT TTAGATAGAC TATCAGCGAG CCATCAAATT CTAAGTGAGT TATATGACTA TCAAAACCAA ATAGATTTAT CTCTACGTCA AGCTCAACTT GGTTTGGAAG CAATTTCAAG AGCGTTAGAG CAAGACCCAG GCAATGATAT ATGGATAAGA CAAAAATACA CTTTGAACTT TAATCTTCTA GCACTCTCAA ATGCAGAGTC AAATGATGTT TCTAGTTTAA AGGATTTACT AGATTCCGAT ATAAAATTAA GTTCATCAAC AAAAAGAGAT GAGATTTACG CAAGTTATTT TCTGGCGTCA GCAAAACACT TACAGCGACA AGGACTGATT ACTGAAAGCA GATATTATGC ATCTGAAGCA AGACATAAAT TCCAGAAAAT ATCAGAAAAG TTCAACCAAA GCACAAACTT CACATCAAGT TTAGCTGAGA GTATATTATT AGAAGCAAAA ACTGTTCAAG ATGAAAAAAC AAAGAGTGAG TTATGTAATG TTGCGAAGAA TTTAATATCA CCAATACTTG AAAAAGATAA ATCACCAGAC TTTACTGTCA TCTATATAAA GTCACTTGAC TGCCTCGGTG AAGTTGTAAA TGATGAAGAC TTAAAAAAAT TATTATTTGA GTCTCTTATA GTTAATACTA AATTTTAA
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Protein sequence | MNDSTFFFGE WQINPSANSL LLGKQVKQLE PKAMDVLLFL CQRAGEVVSS DEIVSHCWPG VDTGDNPLHK IINQLRRALG DSATDPTYIE TIRKRGYRTL AEVRFPIGHE ATASPQSWQG GSPFPGLQAY SANYAEVFFG RSEQISTLLN RICQQIIYGR AFCLVLGPSG SGKSSLINAG VVPNLMKGGG YNGIGVASFS SLDFADVSKG QLLTDLASAM LDWEINDTPV FEGMSADTLA VQLIEDIQGV INQCTQALKV QSFTQPFFAL FIDRLEVLLS SPLFSDTERT VFVELLEQLA TSKAVIIISA CRNDFYPLLV GYPSLMAGKS RGAHFDLAPP TRTELLQMIR LPAVAANLSW EVDSETAMPL DEMLCSDAAS NPDALPMLQY TLQALYLQRS ADDKLLVSVY HALGGIEGAI GKNAEQAISH LSDVEKASLP RILSLLVTLR EDEKSITSRT ARWSQLQSTA EIALVQAMVD SRLFVSHLQN GEPCFSIAHE ALLHRWPRAT AWINEHSDSL SIKSRLQHLS TRWLSEAKHS AYLLAEGKPL KEAQSLSQNP LFDLDDPETA FIAASTKRAN MLRWTRRITV ALLCVLTLTS VIMSVRSIEA EKLALQKRLA AEDLLGFMVG DFADKMRGIG RMDLLDGISN KALEYFSDFS SPDDEKYLSF DARFQHGQTL EAMGEVAYSR NKIDEARSAL IAAQEKMLPL LELQPENLAL LKTLGANAFW LGQLKYDVKD WTASHPFFEQ YLAYSQTMYA LAPEDKDALM ELSYAHNTLG SVSMKQQDFA KAQQDFEESL RLKLLALAKA PEDSQLIADV ANARSWLASA ALSQGDLLSA INIHIQLQQE LSKNINQPYI LDRLSASHQI LSELYDYQNQ IDLSLRQAQL GLEAISRALE QDPGNDIWIR QKYTLNFNLL ALSNAESNDV SSLKDLLDSD IKLSSSTKRD EIYASYFLAS AKHLQRQGLI TESRYYASEA RHKFQKISEK FNQSTNFTSS LAESILLEAK TVQDEKTKSE LCNVAKNLIS PILEKDKSPD FTVIYIKSLD CLGEVVNDED LKKLLFESLI VNTKF
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