Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_1952 |
Symbol | |
ID | 7090119 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | - |
Start bp | 2309994 |
End bp | 2313482 |
Gene Length | 3489 bp |
Protein Length | 1162 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 643460855 |
Product | transcription-repair coupling factor |
Protein accession | YP_002357879 |
Protein GI | 217973128 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00516748 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.328047 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTCACA TATCAGCCCT AACGCCGCCA GCCGTCAAAA ATGGCAATCA AATTCAAACT CTGTCCACCG TGGGCGGCGT TTGCCAAGCC GTTACACTCG CCAGTTTAGC GCGTCAACAT AAGGGGACGA CCTTAGTTGT CACCAGTGAT ACGCCAAGCG CCTTAAGCTT AGAGCTAGAA CTGAGTTATT TACTCAGTAA AACAGGCATT AAGGTCAGAT TATTCCCTGA CCGCGAAACC TTGCCCTACG ACAGTTTTTC GCCCCATCAG GATTTGATCT CCCAGCGACT CGAAACCCTG TCGCAGCTGT CTCAAATTGA GCAAAACATC GTTATCGTGC CCGTAACGAC CTTAATGATG CGCCTGCCAC CTAAGGCCTA TTTAAGCGCC AACGTGTTTG TGCTGAAAAA AGGTGATAGC TACAAGTTAC ACGATGTACG CCAGCATTTA ACCGACACTG GCTACCATTC GGTTGAGCAA GTATATGAAC ACGGCGAGTT TGCGATTCGC GGCTCGATTC TGGATATCTT CCCCACTGGG ATGAATATGC CGCTGCGCAT CGAGCTATTC GATGAAGAAG TGGAAACCAT CCGCCATTTT GATCCTGAAA CCCAACGTTC ATTGCAACCT GTTGACTCGA TTCGCCTATT GCCCGCGAAG GAATTCCCGA CCGACAGCTC GGCCATCGAA GGCTTTAGAC AAAGATACCG TCGCCGTTTT GAGGTCATAG TCAAAGAGCC GGAATCAGTT TATCAGCTGG TGAGCCGCAA CTTGATGCCG GCGGGGATTG AAAACTACCT GCCGCTGTTT TTTGATGACA CAGCCACCCT ATTCGATTAC TTGCCCAAGG ACACTCAACT CGTCACCTTA GGGGATATCG AAAAGTCAGC GCGCGCGCAT CTGCAAGAAG TCGAACATCG TTATCAAGAC AGACGAGTCG ATCCACTGCG GCCGCTACTG GCACCTAAAG AGCTGTATTT ACTCATCGAA GAGTTATTTG CCGCCTTTAA ACCGCTGCCA CGTTACCAAA TGCACGTACC GACGGATGGC ACTGAAGCGA CGAAAGCGGT CGTGATTGCC GCCAGCACCC TGCCCGACAT CAGCGCCAAC CATAAATTAA AGCAACCACT GTTAGCGCTG CAAGATTATG CCAGCAGCGC CAAACGCATG TTGTTTAGTG CCGAGTCCGA GGGTCGCCGC GAAGCGCTAC TTGAATTGCT CGCTAAAATT CAGTTAAAAC CTGCGCTGTT TAACCATTTT GATGAATTTA TTCAAAGTGA TGCCAAGTTA GGCCTTATCG TATCGCCGCT GTCACGCGGT TGTTTGCTGC AGATCAGCGC CAAAGATGGC ATCAGTATCA TTTGTGAAAC TGAACTCTTC GGCCATCGTA TTTCCCAGCA ACGTCGCCGT GAAAAACAGC GTCAGATCAG TAACGATGCC CTGATTAAAA ACTTGGCCGA ACTCAAAGTC GGTCAACCCA TAGTGCATTT AGAACACGGT GTTGCCCTCT ACAAAGGCTT AGTCACGCTA GATACAGGCG GACTGCTCGC CGAATACCTG CAATTGGAAT ACGCCGGCGG CGATAAACTG TATGTGCCAG TGTCTTCATT GCACCTTATC AGTCGCTACA GCGTTGGCGC CGACGAAGAC GCCCACTTAA ATAAACTCGG CAACGAGACC TGGGCTAAAG CCAAGAAAAA AGCGATTGAA AAAATCCGCG ATGTTGCGGC CGAGCTGCTT GATGTCTATG CCCGTCGCCA ATCTCGTCCC GGAGAAAGCT GCGAGATTGA CGAAGAAGAA TACGCCCAAT TCGCTCGCGG CTTCCCCTTC GAAGAAACCG TCGATCAAGA AAGCGCCATC ATCGCCGTGT TAGCCGATAT GCAATCGCCG ACCGCAATGG ACAGATTAGT CTGTGGCGAT GTGGGCTTTG GTAAAACCGA AGTCGCCATG CGCGCCGCAT TTGTGGCCGT CAACGCCGGC AAACAAGTGG TCGTGCTGGT TCCGACTACA TTGCTTGCCC AGCAACACTA TGAAAACTTT AAAGACAGGT TTGCCGACTG GCCCGTGGTC ACCGAAGTGA TGTCACGCTT TCGCACCGCT AAAGAGCAGA CTCAAGTGCT GCAGCAATTG GAAGAAGGCA AAGTCGATAT CGTTATCGGT ACTCACAAGT TATTGCAATC TGAGGCCAAG TTTGAAAACT TAGGCCTGCT GATCATCGAC GAAGAACACA GATTCGGTGT ACGTCAAAAA GAGAAAATCA AGGCCCTACG TGCCAACGTG GATATCCTAA CCCTGACCGC AACGCCTATT CCACGGACCT TAAATATGGC CATGTCGGGC ATGCGCGATT TATCGATTAT CGCCACCCCG CCCGCCAAAC GTTTAGCGGT AAAAACCTTT GTGCGCGAAT CCGATCCTGC AACCGTGCGC GAGGCCATTT TGCGGGAAAT TCTCCGTGGC GGCCAAGTGT ATTACCTGCA CAATAATGTT GAAAGTATTG AAAAATGTGC CCAAGGCATT ATCGATTTAC TGCCAGAAGC GCGGGTAGTC GTCGCCCACG GTCAAATGCG TGAGCGCGAT CTTGAGCGGG TGATGTCTGA CTTTTATCAC CAAAGATTCA ATGTGTTAGT CTGTACTACT ATTATCGAAA CTGGTATCGA CGTCCCGAGT GCCAACACCA TTATTATTGA GCGCGCCGAT ACCTTTGGTC TGGCGCAGTT ACACCAATTA CGCGGCCGCG TCGGACGCTC GCACCATCAG GCTTATGCCT ATTTGATGAC GCCGCATCCT AAACGTATGA CTCCCGATGC GCGTAAGCGT TTAGAAGCCA TTGATGCCCT TGAAGATCTC GGTGCAGGCT TTATGCTCGC GACGCAGGAT TTGGAGATCC GCGGCGCAGG TGAACTCTTA GGCGATGAAC AGAGCGGCCA TATTTCGAAA ATTGGTTTTA GCTTATACAT GGAAATGCTC GAAGCGGCAG TCAAAGCTTT AAAACAAGGC AAAGAGCCAT CGCTGGCGCA AATGCTCAAT CAGCAATGCG AGATTGAACT GCGTATCCCC GCCCTGCTAC CTGAGGCCTA TGTGAGCGAC GTCAATATTC GTCTATCGCT CTATAAACGC ATCGCAGGTT GCGAAACCGA AGCGGCGCTG GATGAGTTAA AAGTCGAATT GATCGACCGT TTTGGCCTAT TACCCGAACC GACGCGCAAC TTAATGGAAA TGACCCTCTA TAAACATGAG GCGACTCGCT TAGGGGCGAC TAAAATAGAA GTGCACAGTA AAGGTGGCAG CATCGAATTT AGTCATGATC ACGTCATCGA TCCTATGTTT ATTATTGGAT TACTCCAAAG CCAGCCACAA ATCTATCGAA TGGAAGGACC GAATAAGTTA AAGTTCAGCC TTGCGGCCGA AACCAGCAAA GACAGGCTCG CTTTAGTGAA ACTCTTGCTC GAACAATTAT CGCAACATCG TCTTGGAGAT AATAAATAG
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Protein sequence | MTHISALTPP AVKNGNQIQT LSTVGGVCQA VTLASLARQH KGTTLVVTSD TPSALSLELE LSYLLSKTGI KVRLFPDRET LPYDSFSPHQ DLISQRLETL SQLSQIEQNI VIVPVTTLMM RLPPKAYLSA NVFVLKKGDS YKLHDVRQHL TDTGYHSVEQ VYEHGEFAIR GSILDIFPTG MNMPLRIELF DEEVETIRHF DPETQRSLQP VDSIRLLPAK EFPTDSSAIE GFRQRYRRRF EVIVKEPESV YQLVSRNLMP AGIENYLPLF FDDTATLFDY LPKDTQLVTL GDIEKSARAH LQEVEHRYQD RRVDPLRPLL APKELYLLIE ELFAAFKPLP RYQMHVPTDG TEATKAVVIA ASTLPDISAN HKLKQPLLAL QDYASSAKRM LFSAESEGRR EALLELLAKI QLKPALFNHF DEFIQSDAKL GLIVSPLSRG CLLQISAKDG ISIICETELF GHRISQQRRR EKQRQISNDA LIKNLAELKV GQPIVHLEHG VALYKGLVTL DTGGLLAEYL QLEYAGGDKL YVPVSSLHLI SRYSVGADED AHLNKLGNET WAKAKKKAIE KIRDVAAELL DVYARRQSRP GESCEIDEEE YAQFARGFPF EETVDQESAI IAVLADMQSP TAMDRLVCGD VGFGKTEVAM RAAFVAVNAG KQVVVLVPTT LLAQQHYENF KDRFADWPVV TEVMSRFRTA KEQTQVLQQL EEGKVDIVIG THKLLQSEAK FENLGLLIID EEHRFGVRQK EKIKALRANV DILTLTATPI PRTLNMAMSG MRDLSIIATP PAKRLAVKTF VRESDPATVR EAILREILRG GQVYYLHNNV ESIEKCAQGI IDLLPEARVV VAHGQMRERD LERVMSDFYH QRFNVLVCTT IIETGIDVPS ANTIIIERAD TFGLAQLHQL RGRVGRSHHQ AYAYLMTPHP KRMTPDARKR LEAIDALEDL GAGFMLATQD LEIRGAGELL GDEQSGHISK IGFSLYMEML EAAVKALKQG KEPSLAQMLN QQCEIELRIP ALLPEAYVSD VNIRLSLYKR IAGCETEAAL DELKVELIDR FGLLPEPTRN LMEMTLYKHE ATRLGATKIE VHSKGGSIEF SHDHVIDPMF IIGLLQSQPQ IYRMEGPNKL KFSLAAETSK DRLALVKLLL EQLSQHRLGD NK
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