| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1719 |
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| Symbol | cpdB |
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| ID | 7086328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | - |
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| Start bp | 2022578 |
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| End bp | 2024623 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 643460623 |
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| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
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| Protein accession | YP_002357647 |
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| Protein GI | 217972896 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0588107 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0000707125 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTAAATA AGAAAATACT CGCAGTGATG ATCACTGCCG CCCTTGGTGT CAGCGCCTGT
AATTCTGATG ACGACAAAGT CGTTCAAGCC GATTTACGGG TACTCGAAAC CACAGATCTG
CACACAAATA TCATGGATTT CAACTACTAC AGTGGTAAAG ACGATCCGAC TATCGGTCTT
GCCCGCACTG CAAGCTTGAT CCACGCTGCA CGCAGCGAAG CTAAGAATAG CGTCCTCGTT
GATAACGGCG ATCTGCTGCA AGGTAGCCCT ATGGGCGATT ATATGGCCAA AGTTGGCCTG
CAAATGGGCG ATGTTCACCC TGCCTATAAA GCCATGAACC TATTAGATTA TGAAGTCGGC
AATATCGGTA ATCATGAATT TAACTATGGT TTAGATTTCT TAAATAAATC CATTAGTGGT
GCAGATTTCC CTTATATCAA CTCAAACGTT TATTGCGCCG ACGATAATGG TTGCTGGAAA
GAAGTTAAAA AAGGTGAGCA TTTATTCACC CCTTATATCA TCAAACAAAA AATTATTATC
GACAGCGAAG GCAATAATCA AACCATTAAC ATTGGTTATA TTGGTTTTGT GCCACCACAA
ATTCTATTGT GGGATAAACA AAATCTGACG GGTAAAGTGA CGGTTGAAGA TATCGTTACC
ACCGCGAAAA AATATGTCCC AGAAATGAAA GCCAAAGGGG CCGATATCAT TATCGCCATT
CCACACTCTG GCATTGGTTC GACGGAAAAT CCTGGCGATC CTATGGCTGA AAACGCCACT
TACGCTTTGA CTTATGTTGA CGGTATCGAT GCGATTCTAT TCGGCCACAG CCACTCTATC
TTCCCTGATG CTAAGTATGC TGACTTGCCC AATACCGATG TCACTAAAGG CCTACTGAAC
GGCGTCCCCG CAGTGATGCC AGGTCGTTGG GGCGATAACT TAGGGGTGGT TGACTTTAAA
CTCGAACGTA GAGATGACAA GTGGCATGTC CTTAGTGCGA AAACGCAAGC TCGCCCTATC
TATGATGGCG CAAATAAAGC CCCATTAGTT GAAGCGGATG CTGCTATTCA CGATGCTGTC
GCAGCCGAGC ACCAAGGTAC CCTCGCCTTT GTGGATGAAC CTATCGGTGT CGCCGCGGCG
GACATGTATA GCTTCCTCAC CTTAGTGCAG GACGACCCTA CGGTACAAAT CGTTTCCGAT
GCGCAAATCG CTAACGTGAA AGCGAAATTG CCTGCAGCAT TAAAAGGGCT GCCAGTGCTG
TCAGCCTCTG CACCTTTTAA AGCGGGCGGT CGCCACGGTA CAACCAGCGA CGCCGATCAA
TTTGTGCAAG TCGATAAAGG TCCATTGACC TTTAAAAACG CCGCAGATCT GTACCTGTAT
CCCAATACTA TGGTGGCAGT CAAAGCGACG GGCGCCGAAT TGAAAGATTG GCTTGAGTGC
TCAGCCAACC AGTTCAATCA AATCGACCCA GCAAAAACCA CCCCACAAGA GTTAATCAAC
TGGGATGGAC ATCCAACCTA TAACTTCGAC GTACTCGACG GCTTAACTTA CAAAATTGAT
GTCACTCAAC CGAACAAGTT TGACCGCGAT TGCGCCGTCG TTAATGCCAA CGCAAACCGT
ATCGTTGATT TAAGCTATAA GGACGAAAAC GGCAAAGTCA TCACAGGTGA AGAATTTGCC
GCGAAAGAGT TTATCGTCGC CTCAAATAAC TACCGCGCCT TTGGTGGTAA ATTTGCCGGT
ACGGGTAGCG ACCATGTCGT GCTCGAACTG CCCGATACCA ACCGTGAGGC GTTAGCGGCT
TATATCACAG CGCAATCTCA GTACAACGAA ACCACGGGTA AGTACGAAGG TATGGTCAAT
CCAAGTGCCG ATTACAACTG GGATTTCAAA ACAATCACGA CCAACGTCAC ATTAGACGTT
CGCTTCCAAA CCCAAGACAG TGACAAAGCC GCGGCCTTTA TCGAAGCCAA TAAACAACGT
GAAATGAAAA AGATCAGCAA GGATGAACTG GGTTTCGCCG TTTATAGCAT CAACCTAACC
AAATAA
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| Protein sequence | MLNKKILAVM ITAALGVSAC NSDDDKVVQA DLRVLETTDL HTNIMDFNYY SGKDDPTIGL
ARTASLIHAA RSEAKNSVLV DNGDLLQGSP MGDYMAKVGL QMGDVHPAYK AMNLLDYEVG
NIGNHEFNYG LDFLNKSISG ADFPYINSNV YCADDNGCWK EVKKGEHLFT PYIIKQKIII
DSEGNNQTIN IGYIGFVPPQ ILLWDKQNLT GKVTVEDIVT TAKKYVPEMK AKGADIIIAI
PHSGIGSTEN PGDPMAENAT YALTYVDGID AILFGHSHSI FPDAKYADLP NTDVTKGLLN
GVPAVMPGRW GDNLGVVDFK LERRDDKWHV LSAKTQARPI YDGANKAPLV EADAAIHDAV
AAEHQGTLAF VDEPIGVAAA DMYSFLTLVQ DDPTVQIVSD AQIANVKAKL PAALKGLPVL
SASAPFKAGG RHGTTSDADQ FVQVDKGPLT FKNAADLYLY PNTMVAVKAT GAELKDWLEC
SANQFNQIDP AKTTPQELIN WDGHPTYNFD VLDGLTYKID VTQPNKFDRD CAVVNANANR
IVDLSYKDEN GKVITGEEFA AKEFIVASNN YRAFGGKFAG TGSDHVVLEL PDTNREALAA
YITAQSQYNE TTGKYEGMVN PSADYNWDFK TITTNVTLDV RFQTQDSDKA AAFIEANKQR
EMKKISKDEL GFAVYSINLT K
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