| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1602 |
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| Symbol | |
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| ID | 7090003 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | - |
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| Start bp | 1872155 |
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| End bp | 1876387 |
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| Gene Length | 4233 bp |
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| Protein Length | 1410 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 643460503 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002357530 |
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| Protein GI | 217972779 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.583296 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00283749 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTAAAG CACTCTTTAA AATTATTTTT CTTCTAGCTA TTTTCCTATC AACTGCAGAA
GCACAACAAT TACCAATAGC TTTAAAAACT AAGTCCTATG GCGTTCCAGA AGGCCTATCC
CAAAGTACAG TCACATCGAT CATTGAAGAT AATGATGGTT ACATCTGGAT TGGTACTTTG
AACGGATTAA ATCGATTCGA CGGTGAAGAA TTTAAGCATT TTTTTGCACA TGATCACTCA
GGTCTATCTA GTTCATTTAT TCAAAGCCTA TTATTTGACA ATAAAAAAAT GTTAGTTGGA
ACTGACAATG GTTTAAATGT TTACGACTCA GAACTTGAAT CCTTCAAAAA ACAAAAAAAA
ATAAATGAAG CCATATGGTC TATAAATGAC AATGGTGAAG TTTATACAAT AGGTACTAAA
AACAAAATAA TTGATATTAG AAAAGATAAT TTAGAAATAA TAAAAACATA TCAAGATGAA
AGCTTTAGCT TCATAAAGAA AGCAATAAAG ACCAACAACG GCTATATTAT AAGAAATCAT
GATGGTAAAA TCATTCATTA TCGCGAAGAT TCAACAGCTA CTATTTTATC CCTACAATCT
GTAGACATAG TAAAAGGCAG AAGTGGAATT TACATTTTAA CATCAGATGG TATTTATAAA
AAAATATCTG AAGACATACC GAAGTCTCTT GCTGGTGAGT ATACAGCTCT AGCCGTGATT
GATGGTCAAG TAATACAAAC AAACCTTGAA TCATCAGAGG TAACATCAAA AGGTTATGTA
TTAGAAAATA AAGAAATTAC AAATCAGGTT CAAGCCTACA GAACGAATAA CTATACAATA
ATACCTTCAT TAAATATGGG ATTTATTCTA ATCAGAGATA GTAGCAATGT TGTAAAGTCC
CTAATAAATC CTATCGGAAA TATCTGGTCA ATAAGCTTGT TAGACAATGA ACACATTGTG
ACTTCTGATG ATAGTAGCGA AGTGGAAGTA TATAATTCAA ACTTTATCCT CGAAGACAAA
ATAGACACGG GAATATCAGG ACCTAAGTAT ATCATAAGAA ACAATGACTC TTTAATTATT
GGGGGTAATA ATGGTCTTTA TGAGTTTAAT GGGAATTTAA AAGCAACAAT ATTAAGCGAT
AGCATTGTCA CTCTATTTAA AAACCCAAAA AGAACCGAAT TAATTGTTGG AACAAACAAT
TCAGACATAT ACATAATTGA TCTACTAGAT AGAAAAAAAA TTCGAAAACT ATCACTAAAA
AATAAACACC CAATCTTCCA AATCCAACAG ACCTTTGATG GCACACTTCT ACTTGCTACT
CAAGGTGGGT TGATAAGTAT AGATGCTAAC GGCAACGAAA AAACAATTTT CGATGATGAC
TTTGTTTATT GCATAACTGA GACACCAAGT GAATATCTTT TTGGAACAAG AACTTCAATC
TATTCGACTA AAAAAGAAAC GTTAGAAACT AATAAGGTTT ATAACTCAAA CAAACCAATC
TACTCAATCG CAATTGATGA TAGCAATGAC TTTATGGCAT CTTCCATAAA TGAGTTGATT
TTAAGCAGAA ATGGAAAATT ACTCACACTA ACAACTGACT ATGGTAGTCA AGAAGAATAC
AATAATCAGA GTGGGATATT CTGGAATGGC AGTTTCTTTT TTGGTGGAAT ATCTGGTGTC
AGTGCAATAA ATAAAGTTAA TGCAATATCT TATATTGAAG ACAATGTTAT AAACACTAAT
ATCAGTGAGC TTTTAGTATT TAACAAAACT GTTAATATAG GCGATGAGCC ACTAGGAAAA
AGTATATCGA AATCAAAATC AATTGAGTTA AAATATTCAG ACTATCCATT TACACTGAAG
TTCAACTCTC CGAAGTCAAG CCATAAACAT ATTGAATACT TTTACAACCT AAATGGTCTA
TCAGATACAT GGATTACTGC AAAAGGCACA AACTCTGCAA CCTACACAAA CCTCTCACCT
GGTCATTATA TTTTTAATGT ATTTGGTGAG AACCCTGTCA CCGGAGTAAA AGGTCCAGTA
AATTCTCTTA ATATTTATAT ATCCCCTCCG TGGTGGCTAT CTTATTGGGC AAAATTAATT
TATTTCATAA CTGTTTTGCT CGTAGCTTTT TTTATTATAA AAGCTGTGTT ACGAAAAAGA
GAAGTGCAAC GCCAAATAGC GCTCAGTGAA GAAAGATTAA AACTTTCCTT ATGGGGAAGT
GGTGATGAAA TGTGGGACTG GGATATAGAA ACTGGCAACA TTTTCCGCTC AAATATCTGG
GGAGCACTTG AATTTCCGCG TGATGGACAT CGCTCGGGTA AATCGGATGA AGAGAGTAAT
ATACATCCAA TGGATCAAGA ACGTGTCCGA GAAGCGCTCA ATAAGCATTT TTATGGTGAA
ACAGATCATT TCGAAGCCGC ATACCGAGTT AAAGGTAAAG ACGACAATTG GGTATGGATC
TTAGACCGCG CCAAAATTGT AGAACGTGAT GACAAAGATA ATGCCCTGCG AATGACTGGA
ACGATTAAGA ATATTAGTCA ATTTAAACAA AAAGAAGAGC AACTAAAACT CTTTGAAAAG
GCTATTGAAA ATATTTCGGA AGGCATGTTT ATCCTAGACA GCGAATACCG CTTTGTCGAA
GTTAATGAAG CTTGCTGTAA GATTTCATTA CGTAACCGAA CTGATTTTAT TGGTAACTTA
CTCACATTTG ATTTATATCC TGAAACCTTC TCCACCCAAA TCAGAACCAT GCTGAAGCAA
CAAGGTCGCT GGGCGAATGA AGTCGAAGCC GCCAGAGGAG ATAAAAGTCA CTTCCATATG
GAGCTCACTA TCGATGCTAT CTATGATGAG TTAGGCGAAT TATCACACTA TGTCGGGGTT
TTCTCGGATA TTTCGAGACG GAAACAGCAA GAAGAAGAGC TTAGAAAACT AACCAATAAT
GATCTCTTAA CCGGACTCCC AAATCGCTCC AACTTACAAG TGACCTTAAG TAACCTAGTG
AATCGAGAAA TAGCCCATGC GCTAATGGTG CTTGATCTTG ATAATTTTAA ACGTATTAAT
GATTCCTTAG GTCACCAAAT TGGAGATACG TTATTAAAGC TCGTTGCAGC CCGCATTAAG
TCCTTACTTC CTAAAAGTAC CAGTATTTAC CGTCTAGGCG GAGATGAATT CGCCATTGTA
TTAGATAAAG GCTCAGATAT AAGCGCCAGC GCTGCGATTG CTAACCGTGT TATCGAAGGG
TTAAAACCCG CTTTTGAAGT GAGTAATGAA CAACTAGTCC TAGGATTAAG TATTGGTATA
GTGCTATTCC CAGAAGACGA GCAAAGCGAG CAAGCATTAC TGAGGAAAGC TGACATTGCT
ATGTACCATG CTAAGTCAGC GGGGGGGAAT TGCTATCAGT TTTATTCAGA GTCATTAAAT
CAACATGCGA TTAGGCAGTT AGAAATAGAG AATCTCATCC GTGAAGGCTT AAAAGATGAT
CTATTTGAAG TTTATTATCA GCCTAAGGTT GATCTTAAGC GCGGTAAAAT TGCAGGCATG
GAGGCTTTAG TCAGATTAAA TCATCCAGTA CATGGCTTGA TACCCCCAAA TGATTTTATT
CCACTTGCTG AAGAAAACGG CTTAATTGTT GAAATTGGTG AAATCGTCTT ACGCAAAGCC
TGTTTCGCAG CGCAGAAATG GCGTGAACAA GGAATATTCA GCGGCAGAGT CGCCGTCAAT
TTATCGTCAC GTCAATTTGC ACTCCCCGAT ATTCAACAGC GAATAGAGTC AATTTTAAGG
CTCACCAAAC TCCCCGCTTG TCACCTTGAA TTAGAAATAA CCGAAGGTAC TGTCATTAAG
CAGCCGGAAA CGGCGATTAT TGTCATGCAG CAACTGGCTA AAATGGGCGT TAGTTTGGCA
CTCGATGATT TCGGCACTGG CTACTCGTCT CTTTCATACT TAAAACGTTT CCCGATTCAT
ACTTTAAAAA TTGATAAAGC TTTTGTTGAC GATATTGATA AGTCTGATCG CGATCTCAAA
ATGGTCGATT CTATTATCAC TATCGCCCAT AACATGGGGC TTTCTGTTGT GGGAGAAGGG
GTAGAACAAG CAGCACAATT GAACATTTTA CGGGCACTTA ACTGTGAAGA GATCCAAGGC
TATATCTTTA GTAAAGCTAT AAAAGAGACC GAATTTACCC TGCTACTCCA AGAAGACATG
ATAAAGCCAA ACACCAAAAG CAACATTAAT TAA
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| Protein sequence | MPKALFKIIF LLAIFLSTAE AQQLPIALKT KSYGVPEGLS QSTVTSIIED NDGYIWIGTL
NGLNRFDGEE FKHFFAHDHS GLSSSFIQSL LFDNKKMLVG TDNGLNVYDS ELESFKKQKK
INEAIWSIND NGEVYTIGTK NKIIDIRKDN LEIIKTYQDE SFSFIKKAIK TNNGYIIRNH
DGKIIHYRED STATILSLQS VDIVKGRSGI YILTSDGIYK KISEDIPKSL AGEYTALAVI
DGQVIQTNLE SSEVTSKGYV LENKEITNQV QAYRTNNYTI IPSLNMGFIL IRDSSNVVKS
LINPIGNIWS ISLLDNEHIV TSDDSSEVEV YNSNFILEDK IDTGISGPKY IIRNNDSLII
GGNNGLYEFN GNLKATILSD SIVTLFKNPK RTELIVGTNN SDIYIIDLLD RKKIRKLSLK
NKHPIFQIQQ TFDGTLLLAT QGGLISIDAN GNEKTIFDDD FVYCITETPS EYLFGTRTSI
YSTKKETLET NKVYNSNKPI YSIAIDDSND FMASSINELI LSRNGKLLTL TTDYGSQEEY
NNQSGIFWNG SFFFGGISGV SAINKVNAIS YIEDNVINTN ISELLVFNKT VNIGDEPLGK
SISKSKSIEL KYSDYPFTLK FNSPKSSHKH IEYFYNLNGL SDTWITAKGT NSATYTNLSP
GHYIFNVFGE NPVTGVKGPV NSLNIYISPP WWLSYWAKLI YFITVLLVAF FIIKAVLRKR
EVQRQIALSE ERLKLSLWGS GDEMWDWDIE TGNIFRSNIW GALEFPRDGH RSGKSDEESN
IHPMDQERVR EALNKHFYGE TDHFEAAYRV KGKDDNWVWI LDRAKIVERD DKDNALRMTG
TIKNISQFKQ KEEQLKLFEK AIENISEGMF ILDSEYRFVE VNEACCKISL RNRTDFIGNL
LTFDLYPETF STQIRTMLKQ QGRWANEVEA ARGDKSHFHM ELTIDAIYDE LGELSHYVGV
FSDISRRKQQ EEELRKLTNN DLLTGLPNRS NLQVTLSNLV NREIAHALMV LDLDNFKRIN
DSLGHQIGDT LLKLVAARIK SLLPKSTSIY RLGGDEFAIV LDKGSDISAS AAIANRVIEG
LKPAFEVSNE QLVLGLSIGI VLFPEDEQSE QALLRKADIA MYHAKSAGGN CYQFYSESLN
QHAIRQLEIE NLIREGLKDD LFEVYYQPKV DLKRGKIAGM EALVRLNHPV HGLIPPNDFI
PLAEENGLIV EIGEIVLRKA CFAAQKWREQ GIFSGRVAVN LSSRQFALPD IQQRIESILR
LTKLPACHLE LEITEGTVIK QPETAIIVMQ QLAKMGVSLA LDDFGTGYSS LSYLKRFPIH
TLKIDKAFVD DIDKSDRDLK MVDSIITIAH NMGLSVVGEG VEQAAQLNIL RALNCEEIQG
YIFSKAIKET EFTLLLQEDM IKPNTKSNIN
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