Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_1454 |
Symbol | fliA |
ID | 7087507 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | + |
Start bp | 1697011 |
End bp | 1697724 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 643460357 |
Product | flagellar biosynthesis sigma factor |
Protein accession | YP_002357384 |
Protein GI | 217972633 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.375178 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAATAAAG CCGCTGCGTA TACTTGTTTA GACAATAAAT CGTCGATCGT TGAACAGTAT GCTCCGTTGG TTAAAAGAAT TGCGCATCAT TTACTCGCCA GACTACCTGC CTCAGTGCAG TTAGATGATT TACTCCAAGC TGGGATGATG GGGTTATTAG AAGCATCATC CAAGTTTGAT GGTGGCAAGG GTGCGAAATT TGAAACCTTC GCCGGCATAC GCATACGTGG GGCCATGTTA GATGAAATTC GCCGCGGCGA TTGGGTCCCT CGTTCCGTTC ATCGTAACAA CCGCAAGGTT GCACACGCTA TAGATGAGTT AGAGCAAGCG CTGGGTCGTG ATGCACGCGA CACAGAAATT GCAGAAAAAC TTGATATGAC GCTCGATGAG TACCATCATA TTCTTAACGA TGTTTCTGTC GGAAAAATCA TAGGGATAGA AGACTTAGGC GTATCTCAGG ATATACTTAC AGTGAGTGAT CGGTCCGATG ATGATTCATT TGAAGCCTTA GCTGAGAACC AATTTCATTC TGCGCTGGTT GAGGCAATTA AATTATTGCC TGAAAGAGAT GCATTAGTGT TATCCCTGTA CTACGATGAA GCATTGAATT TAAAAGAGAT TGGCGCCATT CTTGAAGTTA GTGAATCGCG GGTTAGCCAG ATATTAAGTC AGGCAATGTT GCGATTGAAA GCTAAACTCA AGCACTGGAC ATAA
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Protein sequence | MNKAAAYTCL DNKSSIVEQY APLVKRIAHH LLARLPASVQ LDDLLQAGMM GLLEASSKFD GGKGAKFETF AGIRIRGAML DEIRRGDWVP RSVHRNNRKV AHAIDELEQA LGRDARDTEI AEKLDMTLDE YHHILNDVSV GKIIGIEDLG VSQDILTVSD RSDDDSFEAL AENQFHSALV EAIKLLPERD ALVLSLYYDE ALNLKEIGAI LEVSESRVSQ ILSQAMLRLK AKLKHWT
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