| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1371 |
|---|
| Symbol | |
|---|
| ID | 7088796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | + |
|---|
| Start bp | 1600670 |
|---|
| End bp | 1601458 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 643460275 |
|---|
| Product | type IV pilus biogenesis/stability protein PilW |
|---|
| Protein accession | YP_002357302 |
|---|
| Protein GI | 217972551 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.503899 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0591536 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCATG GATTGCCAAG GTTTTCGTTG ATTTTAACCC TGACATTATT GATGACAGGG
TGCGTCACTG AGCGTACTTA TACTGGGACA GATATTCCTG TTTCGGAACG AAAGTTAGAC
AAAGTCGCCG CCGCGCGCGA GCGTTTGCAG CTCGGCTTAA CCTATTTAAA TCGAGGTAAC
TCGGAACAAG CCAAATACAA TCTTGATAAA GCATTAGAAT ATGCTCCAGA GCTCGAAGAT
GTGCATACTG CTTTGGCTTA TTACTATCAA ACCGTGGGCG ATCTAGTACG TACCGAAGAG
TCGTACATGA ATGCCATTAG TACCAAGGAC GCCTCTGGCG ATTCCATGAA TAATTTCGGG
GTGTTTTTGT GTCAACAAAA GCAATACGAC AAAGCTGAAA AAATGTTTTT GGCCGCAATC
GAGATGCCTA AATATACGCG AACGGCCTCA AGCTACGAGA ACTTAGGTCT CTGTAGCCGT
GAAGCAGGAC AAGCAGAAAA GGCACGACAG TATTTTCAGA TGGCGTTAAA GTATGACCCG
AGAAGATCGG TGTCGTTGCT GGAGATGGCA GAGTTAGAAG TCGACCAAGG TGATTTTATT
CAGGCGCGAA ACCAATTAGC GCGATATCAC CAAGTGGCTG AGCAAACTCC AGAAAGTTTA
GCGCTCGGAA TCAAAATAGA GCAGGCAGTG AATGATGATG CCGCTGTGAA GAGATTTGGT
ATTTTATTGC TTGCCAAATT CCCAGCATCA CCTCAGGCCA AGCAATACAG AGTTAATTTG
CATCAATGA
|
|---|
| Protein sequence | MKHGLPRFSL ILTLTLLMTG CVTERTYTGT DIPVSERKLD KVAAARERLQ LGLTYLNRGN
SEQAKYNLDK ALEYAPELED VHTALAYYYQ TVGDLVRTEE SYMNAISTKD ASGDSMNNFG
VFLCQQKQYD KAEKMFLAAI EMPKYTRTAS SYENLGLCSR EAGQAEKARQ YFQMALKYDP
RRSVSLLEMA ELEVDQGDFI QARNQLARYH QVAEQTPESL ALGIKIEQAV NDDAAVKRFG
ILLLAKFPAS PQAKQYRVNL HQ
|
|---|
| |