| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1278 |
|---|
| Symbol | |
|---|
| ID | 7089841 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | + |
|---|
| Start bp | 1509093 |
|---|
| End bp | 1510493 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 643460183 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_002357210 |
|---|
| Protein GI | 217972459 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | [TIGR00905] transporter, basic amino acid/polyamine antiporter (APA) family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0546125 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAGA ACAGGATAGG TCTCTGGTCA CTCACAGCCC TAGTGTTCAG CTCTATGGTA
GGTGCGGGGA TTTTTAGCCT GCCGCAAAAC ATGGCCGAAG TGGCGGGTGT TCGAGCAGTG
CTGATTGGCT GGGGGATCAC AGGTGTGGGC ATCTTGGCAT TGGCTGCGAG TTTCCTCTAT
CTGTCGCGCT TGAAGCCTGA GCTTGATGGC GGCATTTATA CCTACGCGAG AGCCGGTTTT
GGTGAGCTGG TGGGCTTTTT TTCTGCTTGG GGCTACTGGC TTTGCGCCAC CATAGGCGTG
GTGGGATATT TAGTGATTGC GTTTGCCGCC CTTGGCAGCT TTGTCGATAC GCCGCAGCAA
GTTTGGTTTG GCGAGGGCAA TACGCTGGCC GCTTTTATCG GTGAGTCGTG CATTTTGTGG
GCGGTGCATT GGTTGGTCTC CCGCGGCGTA CAGCAGGCCG CCATGTTCAA TCTGGTGGCG
ACATTAGCCA AAAGTTTGCC GTTATTGCTG TTTGTACTGT TTGCCTGCTA TTACTTTGAC
CCTGTGACTT TTGCTCAGGA CCAAGCGGCC AGCACTTTAG CTGTGCCAGT GTCGGAGCAA
GTGCGTAACA CTATGTTGAT CACGCTTTGG GTGTTTACCG GTATCGAAGG TGCGGCTGTG
TTATCGGCGC GTGCTAAAAA TAAGCGGGAT GTGGGCACGG CGACTGTCCT TGGCGTCGTG
CTGGCGCTAC TACTTTATGT GCTTATCTCT GTGTTAGCGC TGGGAATTTT AGCTCGTCCT
GAACTTGCAG CGCTGCCTAA TCCCTCTATG GCGGGACTGA TGGGACACAT GAGCGGCTCT
TGGGGCAAGG CGCTGATCAG CGTCGGGCTT ATTGTTTCTG TGCTGGCCTC CTATGTGAGT
TGGACTCTGT TCTCGGCAGA AGTGCCTTTC AGCGCAGCCC GCCACGGTGC TTTCCCTGCC
ATCTTTTTGC GGCAGAATCG CAATGGCACG CCGATCGCTT CCCTCTGGTT ATCTAGCTTA
ACAGTGCAGT TTTGTTTGAT ACTGGTGTGG CTGCTAGGTA AGGGGTATAC CAATCTGCTA
CTCATTTCTA CGTCGATGAT TTTAGTGCCT TATCTATTGA TTGGACTGTT CCTGCTGAAG
CTTTCTTTGA GTGGGCAGGG CAATGGGCTG ATGAGAGTCG TGGCGCTGGT GGCGAGCGGT
TATGGACTCT GGCTACTCTA TGCCGCTGGT GTCGAGTATC TGTTGCTGTC CTTGCTACTT
TACGGCCCCG GGTTACTCTT GTTTCTCTAC AGTCGCCGCC AAGTTGTTGA TGGTAAAAAG
CTTAACGGAC GTGAGCGATT GCTAGCGGGG GCGACGTTGC TGAGTTTGTT CCCCGCGTTA
TGGTCGTTTT GTTATCAATA G
|
|---|
| Protein sequence | MKENRIGLWS LTALVFSSMV GAGIFSLPQN MAEVAGVRAV LIGWGITGVG ILALAASFLY
LSRLKPELDG GIYTYARAGF GELVGFFSAW GYWLCATIGV VGYLVIAFAA LGSFVDTPQQ
VWFGEGNTLA AFIGESCILW AVHWLVSRGV QQAAMFNLVA TLAKSLPLLL FVLFACYYFD
PVTFAQDQAA STLAVPVSEQ VRNTMLITLW VFTGIEGAAV LSARAKNKRD VGTATVLGVV
LALLLYVLIS VLALGILARP ELAALPNPSM AGLMGHMSGS WGKALISVGL IVSVLASYVS
WTLFSAEVPF SAARHGAFPA IFLRQNRNGT PIASLWLSSL TVQFCLILVW LLGKGYTNLL
LISTSMILVP YLLIGLFLLK LSLSGQGNGL MRVVALVASG YGLWLLYAAG VEYLLLSLLL
YGPGLLLFLY SRRQVVDGKK LNGRERLLAG ATLLSLFPAL WSFCYQ
|
|---|
| |