| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_0437 |
|---|
| Symbol | |
|---|
| ID | 7086913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 503881 |
|---|
| End bp | 505767 |
|---|
| Gene Length | 1887 bp |
|---|
| Protein Length | 628 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 643459364 |
|---|
| Product | periplasmic/7TM domain sensor diguanylate cyclase |
|---|
| Protein accession | YP_002356394 |
|---|
| Protein GI | 217971643 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0211155 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAAAC GAAACTCGTC ACTCATACTC TTGCTGTGGC TATGGATGTG TTCAACACCT
TCATTCGCAA CCCTATTAAG CATTGATGAA TCAACGGCGA CCCCGTTAAA CCTTACGCCT
TGGTTGATGG TGAGCCACCC CACTTCGGCG AAGGAATTTA CCGAGATCCA AGCCTTGCCA
AAAACGGATT GGCATAACTT CACCAATAAA GACATTCAAA AACTCAGCGG CCATGATTTT
TGGCTGAGTT TCAGCTTAAC TAGCCCAGAC GAAACACTTT CACGCATTTT AGCGTTAGAT
AACCCCTTGT TAGACAAAGT GACTATCTAC CATTTAGTCA ATAATAAGCT CGCTAATACT
GTGCTTATGG GCGACACCTT TCCCTATAAC GAACGACCAT TTTTGAGCAA TATCTTCCTG
TATCCTTTTA AGCTCAACAT GGATGATACC CATACTTTTT ATTTGCATAT TCAGACCGAA
GGCAGCGCGG CGGTATCGTT GAATCTCTGG TCATCTAACG ACTTAGCCCA GATTGCCGAA
TCCACCGCCG TCGAACATGG TTTCCAACTC GGCGTACTGG CCGCGATTGG TATCTTTAGC
CTCTTTATTG CCATTGCATC GGGCTCATTT AGTTACAGCT ATTATTCCGG CTACGTGCTT
AGCATGACCT TGCTCGTCGC TACCATCAAC GGTTTTGCCT TTCGATTCCT CTGGCCAAAT
TGGCCGATAT TACAGCAAGT TATGGTGCCA TTTTTACTGC CAATCGTTAT GGCGTTTGCG
CTGATGTTTA CCGAAAAAAT ATTACAGCTC AAATATTTAA ACCGCCGCAT GCTGCTGACT
TGTCGCTATA GTGCTGTGTA TATCCTATGT ATTGGACTCG CCACGCCTTT TATCCAATAT
GGAACGGCGC TCTATATCGA GATCATTTCC GTTGCAGTGC TCAGCCTGGT ACTGATGGTC
TTTGCCATTA CTCAGGCTAT CAATGGCCAT AAACTGGCAC GTATGTACAC TATTGGCTGG
GTGAGTATGC TGACAGGAGC TTGCATCAGT AGCTTGTTGT ATCTCAGCGT AATTGACCTC
AATTTAAAAC CGCAAACGCC TGTCATGCTC GGCCTGACGT TTGAAATCAT CTTTATGTCT
TTGGTGCTCG CCATCCGCTA TAACGATGAA CGCAAAGCTA AGCTACGTAT TCAGCAAGAG
GCCTTGAAGC AAGCACAGAA AATTCGCAGC GCGCGGGAAG AAGCCCTAAA AGCGGAAGCC
GAGAGCAATG AGAAACTCGA GCAAATGGTG CAAGAGCGCA CCTTAGAACT TGAAATCACC
CTCAGAGAAT TGCATGAGGT AAACCAAAAG CTCACCGAAC AAAGTACTAT CGACAGTTTA
ACTGGGGTCA AAAACCGCAG TGCTTTCGAT AAACGTTTGA TCGCTGAAAG CCGGATCAGC
CGCAGGCAAG AAACACCCAT AGCCCTGTTG ATGCTCGATA TCGATCGCTT CAAGCTGATC
AACGATAGAT TCGGCCATCT TGCAGGCGAT GAAGCCTTAC GAACCATTGC CCAAACATTA
CAGCAACATT TAAAGCGGCC AACGGATCTC GTATCACGTT ATGGAGGCGA GGAGTTTGCT
ATCATCCTGC CTAATACAGC AGAAGATGGT GCACTCCAAG TCGCTGAAAC GATAAGAGAC
GCAGTTGCCT CTATCAATTT CGAATGGGAA GTTGTAGCAA TACCTTTGAC TATCAGTATT
GGAGTTAGTG CCGATATCGT CACTAACGAT CAGCACTGCA CCAAATTATT AGAACAAGCG
GATAAAGCCC TCTACCAAGC GAAAAATGGT GGACGTAATC AAGTCAGCTT ATTTTCATCA
GTTCAAGCAG GACCAGTACC TAATTAG
|
|---|
| Protein sequence | MLKRNSSLIL LLWLWMCSTP SFATLLSIDE STATPLNLTP WLMVSHPTSA KEFTEIQALP
KTDWHNFTNK DIQKLSGHDF WLSFSLTSPD ETLSRILALD NPLLDKVTIY HLVNNKLANT
VLMGDTFPYN ERPFLSNIFL YPFKLNMDDT HTFYLHIQTE GSAAVSLNLW SSNDLAQIAE
STAVEHGFQL GVLAAIGIFS LFIAIASGSF SYSYYSGYVL SMTLLVATIN GFAFRFLWPN
WPILQQVMVP FLLPIVMAFA LMFTEKILQL KYLNRRMLLT CRYSAVYILC IGLATPFIQY
GTALYIEIIS VAVLSLVLMV FAITQAINGH KLARMYTIGW VSMLTGACIS SLLYLSVIDL
NLKPQTPVML GLTFEIIFMS LVLAIRYNDE RKAKLRIQQE ALKQAQKIRS AREEALKAEA
ESNEKLEQMV QERTLELEIT LRELHEVNQK LTEQSTIDSL TGVKNRSAFD KRLIAESRIS
RRQETPIALL MLDIDRFKLI NDRFGHLAGD EALRTIAQTL QQHLKRPTDL VSRYGGEEFA
IILPNTAEDG ALQVAETIRD AVASINFEWE VVAIPLTISI GVSADIVTND QHCTKLLEQA
DKALYQAKNG GRNQVSLFSS VQAGPVPN
|
|---|
| |