Gene Sbal195_3890 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbal195_3890 
Symbol 
ID5755705 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS195 
KingdomBacteria 
Replicon accessionNC_009997 
Strand
Start bp4584115 
End bp4585008 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content44% 
IMG OID641290232 
ProductHflC protein 
Protein accessionYP_001556310 
Protein GI160876994 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID[TIGR01932] HflC protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000138111 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTAGAT TAAGCGTTAT TCTTATCGCC GTACTCTTAG GTATTGGTTT GTCATCTTTA 
ATGGTGGTGA ATGAAGGCGA ACGCGCAATT GTGGCGCGTT TCGGGGAAAT TTTAAAAGAC
AACGTTGACG GTAATCGAGT CACCCGCGTC TACGGTCCAG GTCTGCACAT TAAAGTGCCT
GTGATCGATA AAGTAAAATT ACTCGATGCC CGTATTCAAA CACTCGATGG TGCTGCTGAT
CGTTTTGTGA CTTCAGAGAA GAAAGACCTT ATGGTCGATT CCTATGTGAA GTGGCGTATT
GCAGATTTCG AAAAATATTA CCTGTCCACA AACGGTGGTA TTAAGTCGAA TGCTGAATCG
CTATTACAAC GTAAGATCAA CAACGATTTA CGTACTGAGT TTGGTCGTCG CACTATCAGA
GAGATTGTCT CTGGTAAGCG TGATGAATTG CAAAATGACG CGTTAGAAAA CGCCTCAGAA
AGCGCCAAAG ACTTAGGTAT TGAAGTTGTC GATGTGCGTG TAAAGCAAAT CAATTTACCT
GCTAACGTCA GTAACAGTAT TTACCAACGT ATGCGTGCCG AGCGTCAAGC TGTGGCAAAA
GAGCATAGAG CACAAGGTAA AGAGCAATCT GAAATCATTC GTGCAACGAT TGATGCCAAT
GTAACAGTGA AGATTGCTGA AGCTGAGCGT AAAGCCTTAA CCATACGTGG TGAAGGTGAT
GCATTAGCGG CGAAGATATA TTCTGATGCT TACAGCAAAG ATGCTGAGTT CTTCGGCTTT
GTTCGTAGCT TAGAAGCCTA TCGTGCCAGC TTCTCAGGCA AGTCCGATAT CATGGTGTTA
GAGCCTGATA GCGAGTTCTT CAAGTATATG AAGAGCACTG CACCTAAGAA GTAA
 
Protein sequence
MGRLSVILIA VLLGIGLSSL MVVNEGERAI VARFGEILKD NVDGNRVTRV YGPGLHIKVP 
VIDKVKLLDA RIQTLDGAAD RFVTSEKKDL MVDSYVKWRI ADFEKYYLST NGGIKSNAES
LLQRKINNDL RTEFGRRTIR EIVSGKRDEL QNDALENASE SAKDLGIEVV DVRVKQINLP
ANVSNSIYQR MRAERQAVAK EHRAQGKEQS EIIRATIDAN VTVKIAEAER KALTIRGEGD
ALAAKIYSDA YSKDAEFFGF VRSLEAYRAS FSGKSDIMVL EPDSEFFKYM KSTAPKK