| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_3783 |
|---|
| Symbol | |
|---|
| ID | 5755597 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 4458417 |
|---|
| End bp | 4462064 |
|---|
| Gene Length | 3648 bp |
|---|
| Protein Length | 1215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641290124 |
|---|
| Product | outer membrane adhesin like proteiin |
|---|
| Protein accession | YP_001556203 |
|---|
| Protein GI | 160876887 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01965] VCBS repeat
[TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATACAAA AAAATAACTT GAGCAAGGTC GCCATTTGTG TAGGGCTCGC TTTAACATCT
AGCTCAGCTA TAGCTGCAAA CAGTTGGTTA TCACGGGTCA ATACTGTCAC TGAACAGCAA
GACAAATCCA TTGTATCAGC AAACCATATG CAATCAGTTT CAGTGATGAC TTCTGATTCG
TCTAACGCTG TTTTCGATAT TACTGTGTCT TTGCACAATA ATCCTGAAGG GAGTGATCAG
AAAGCCTACG AGGAAATATT GGGTTATTTT GCCGATGGGG TATGTGAGCA ATCGAACGGT
GAACATAAGC TCGGAAAGAT AAGTATTTTC AGAGAAAATA AGCATAGATC TAAATCGGAC
ATTATTTGGG GCGAGCGTGA ATGGCCGCGA GCAAATACTG CGGGCTTTGG CGCCAATGGT
ATGCATATTT GGTTTGGAGA TGTTTTTCCA AATGGTGCAG GGCAAGGCAA AGATCACAAT
ATGCTCACCG ATACCCTGGG CTCTGGCTAC ACCTTGGCCC ACGAGTGGGG ACACTATGCC
TATGGTGTGT ATGATGAGTA TAAAGGTAAC GCGGTTTCCG GTGCTGCTAA TGCAACGCTC
ACCACTGACG TGGCCACTGA TTCCATTATG AGTAATCAAT GGCAAGCAAG AAACGGTGAT
ATGAAATGGT TGAATCATTC AACTGCGAGC AATATTGGTG ATGTAAACCG TACCGCACAG
GGACGAGTGT ATGGTAAGAG TGCTTGGGAA GTGCTTGCTC AAGACGTTAA AGACGACCCT
AAATCTGGCC GGAAAACGGC TCAGCCAACT CGTACTCGAT ATACTACTTT GGCGAATAAT
GCGCCTGATG CTAATAATCC TGTAAAGAAA GAGTTACCCG CAGCGCAGTT TAGTTGTCGT
GATCAGCTTG ATTTTGTTTG GGTTGAAGGC GATATCGATA TGCAGATTGT CATGGACCGT
TCGGGTAGCA TGTTTGGTTC GCCTATCGAT AACGCCAAGC AAGCCGCTAA AATACTTGTT
GATGCGACTG CTGAAGGCAG TACTGCGATG GGGTTAGTTT CATTCTCAGG CCGTTCGAGT
GTTAAGCAAG ATTTTGCGAT GCAAAAAATG CCCAAGCCAG ATAACGGTGT TAAACAAGCT
TTGAAAGGTG CAATTGATAA TATTTATGCC AATGGTTCAA CGGCATTGTT CGATGGCAGT
CAGTTAGCAC TTGATAATTT ATCGGCTTAT CAGGCTTCGG CGGCAAGTGG CGCACCAGGT
GTCGTTTTTG TGCTTGCTGA TGGTGACGAT AATAATTCTA TAAAATCAGA ATCCTCGGTC
ATCACTGCCT ATCAAAATGC CAATGTACCA ATTTTTAGTT TCGGTTATGG CTCAGCTTCG
CCAACGGGTC CTTTAGTGAC AATGGCCAAT GCAACAGGCG GAAAATACTT TTCTTCACCA
ACAACGTTAG CCGAAATTAT CGATGCTTTT TTACAAGCAA ATGCCATTGC CACTGATAAC
CAAAACTTAG TGTCATCAAC GCTTAATATT GCAAGTGGCA CGGGTGCAAC TCAGAGTATT
TATATCGATT CTGGTTTAGA TAATGTCAAT ATTTTCGTAA ACCATAAAGG CGGCGCTTCT
GATCTGCAAC TCACGCTAAA AGATGCTTCA GGTAATAATG TCAATGGCGT AACTTTCGAT
TGTTTACCTG TGTCTGGAGG GCAATCTTGT AGCGTCAATG TTCCTAATAG TCTTGTTGCC
TCACTTGGTC ATGGTGAATG GCAACTTGAG TTAATAAACA CAAATGCAAA TCGTGCGCTA
GATGCGACGG TCAATGTCAG TGCAGAGCCA AGTCTAGCGG GAAGTTATAC TGTCTCTGTT
GAGGGATTTG CTGGTAATGC CGTAAGTTAC CCAAGCCCGA TGATTTTAAC GACTGCGTTA
ACCAAAGATA AACTTATCAC TGGTGCTAAT GTCATCGCTA CGATCAAGGA CCCAATGGAC
AACACGACCA ACTTGGAAAT GTTTGATAAT GGCCAAGGCG GTGATGCGGT TGCAGGTGAT
GGTATTTACT CCGCCGTTGC ACCATACAAT CAGAATGGTA TTTATCAAGT CGAAGTGAAT
GTTGATAACA AAGAAAGCAA GGCTAAATAT ACTGCCACAG GCCTATTTAC ACCCACATTA
GACGGCTCTG AGCCAGTACA AGAAGCTTTA CCAGCCATAA CGGAGAATTT TGTACGTATT
GCGAAAACCT CATTGGTTGT GAGCAATGTG CCTTATTTTG ACAGTGATGG TAGCTATATC
ACCGCAATTA AACTCGATAC GACCAATGCT GGTATCAATG GAGTGATTGA CAGTGCTGGC
GATCTTGATT TCTATGTCTT AGAAAATATA GATATGAGCA AAGACCTCGT TGTACGTGTG
ACAGACTCCA GCTTAGGTAT GAAGCCAAAG TTAACCGTTT ACAAATCAGA CGCGTCTACG
ACAATTGTTG ATAATGTTAC CCTAGCAACA AATCCATCAG CAACAAACTA TGTATTTTCA
AAGCTAGCTA AGTCTGAATT GGAATCGACT TTATATGTTG TCGTTAGCCA CGAAGATGAC
ACAGCTGTTA CGGGAGGATA CCAAGTGAGT GCGGGTGAGC CTTTAAACAC TGACGTCCCG
CCGAACAATG TGCCAGTAGC CAACTCGGAT GCTATGACAA TTTGGGCTGG CCAAAAAGTG
ACAATTTCAC CTTTGGCAAA TGATACGGAT GCAGATGGTG ATACTTTAGT GATCGATAGC
GTTACTACTG GATCTACTAA GGGGACTGTT GCAGTTTCGG GCAATGTTAT CAGTTATGAC
TCAGGTAGTG CCTTTGCAAA TGAAACGCCA GGCTCAACCG TATTAGATAG CTTTACTTAC
ATCATTACCG ATAACAAAGG TGGCTTTGCT GAAGCTACAG TTGATGTCAG TGTTAAAATT
AATACACCGC CAACAGCAAC GCCTGATGCT ATCAGTGTCA ATGAGAATGC GACTGTTACA
ATATCGCCGT TAACGAATGA CACTGATGCC GATGGTCATA CTTTTACCCT CACGGCTAAA
CAAGCTAGCC TGAAAGGTAA GCTGACAGAT AATGGCGATG GTACGTTTAT CTACGATCCT
AACGGTCAGT TTAATGATTT GGCCAAAGGT GAAACGGCCA ATGAAGTATT TAGTTACACC
ATCACAGATG AAATTGGCGC GACAAGCACA ACTGAAGTGA CTATTAGTGT TGTTGGTCTT
AATGCGGCTC CTGTTGCTGT CGCTGACACA GCGGTAACGA CTAAGTCGGG CAACATACAA
ATTGCCTTAC TTGCAAATGA TACCGATGTT GATGGAGACA CGCTTACTAT CACAGCTATT
GATGTTGGCT CTTTGAAGGG CAAGGTCACC AATAACAATG ATGGTACTGT GACTTATAGT
CCTAATGGAC AATTTGGTCA TCTATATCAA GGTCAATCTG CAACAGAGAC TTTTAGTTAT
ACCATCTCAG ATGGTGATGC TGAAATGAAG GCATCTGTTA CAGTGACGAT CAATGGTGAA
GGTCAAGCGC CGGTAGAACC TGAAAAAGAA GGTTCTTCAG GTGGTAGCTT GTCATGGTTA
TCATTGCTAC TTGCACCATT AGCGTTTAGC CGCCGTCGAG TTAAATAA
|
|---|
| Protein sequence | MIQKNNLSKV AICVGLALTS SSAIAANSWL SRVNTVTEQQ DKSIVSANHM QSVSVMTSDS
SNAVFDITVS LHNNPEGSDQ KAYEEILGYF ADGVCEQSNG EHKLGKISIF RENKHRSKSD
IIWGEREWPR ANTAGFGANG MHIWFGDVFP NGAGQGKDHN MLTDTLGSGY TLAHEWGHYA
YGVYDEYKGN AVSGAANATL TTDVATDSIM SNQWQARNGD MKWLNHSTAS NIGDVNRTAQ
GRVYGKSAWE VLAQDVKDDP KSGRKTAQPT RTRYTTLANN APDANNPVKK ELPAAQFSCR
DQLDFVWVEG DIDMQIVMDR SGSMFGSPID NAKQAAKILV DATAEGSTAM GLVSFSGRSS
VKQDFAMQKM PKPDNGVKQA LKGAIDNIYA NGSTALFDGS QLALDNLSAY QASAASGAPG
VVFVLADGDD NNSIKSESSV ITAYQNANVP IFSFGYGSAS PTGPLVTMAN ATGGKYFSSP
TTLAEIIDAF LQANAIATDN QNLVSSTLNI ASGTGATQSI YIDSGLDNVN IFVNHKGGAS
DLQLTLKDAS GNNVNGVTFD CLPVSGGQSC SVNVPNSLVA SLGHGEWQLE LINTNANRAL
DATVNVSAEP SLAGSYTVSV EGFAGNAVSY PSPMILTTAL TKDKLITGAN VIATIKDPMD
NTTNLEMFDN GQGGDAVAGD GIYSAVAPYN QNGIYQVEVN VDNKESKAKY TATGLFTPTL
DGSEPVQEAL PAITENFVRI AKTSLVVSNV PYFDSDGSYI TAIKLDTTNA GINGVIDSAG
DLDFYVLENI DMSKDLVVRV TDSSLGMKPK LTVYKSDAST TIVDNVTLAT NPSATNYVFS
KLAKSELEST LYVVVSHEDD TAVTGGYQVS AGEPLNTDVP PNNVPVANSD AMTIWAGQKV
TISPLANDTD ADGDTLVIDS VTTGSTKGTV AVSGNVISYD SGSAFANETP GSTVLDSFTY
IITDNKGGFA EATVDVSVKI NTPPTATPDA ISVNENATVT ISPLTNDTDA DGHTFTLTAK
QASLKGKLTD NGDGTFIYDP NGQFNDLAKG ETANEVFSYT ITDEIGATST TEVTISVVGL
NAAPVAVADT AVTTKSGNIQ IALLANDTDV DGDTLTITAI DVGSLKGKVT NNNDGTVTYS
PNGQFGHLYQ GQSATETFSY TISDGDAEMK ASVTVTINGE GQAPVEPEKE GSSGGSLSWL
SLLLAPLAFS RRRVK
|
|---|
| |