Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal195_3610 |
Symbol | mdoD |
ID | 5755424 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS195 |
Kingdom | Bacteria |
Replicon accession | NC_009997 |
Strand | - |
Start bp | 4249671 |
End bp | 4251359 |
Gene Length | 1689 bp |
Protein Length | 562 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641289953 |
Product | glucan biosynthesis protein D |
Protein accession | YP_001556032 |
Protein GI | 160876716 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3131] Periplasmic glucans biosynthesis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000323201 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.858477 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACCCA ATTTATTTCC CGAACAAAGA AACGTTTACC AACAATCGAT GGTGACAGTA CCTTCGATTG AAGCCCAATC CTCCTCTCGT CGCGGCCGTT TGCAGCGCAT GGTTGGCAGC GTATTGTTAA CCTGTAGCGT ATTGCTGAGT CTTTCGGCGT GTGCGGCGGG TAAGCAGGCG TCACCACAAG AAGGTGAAGA GTTCAGTTAC GCTTGGCTTA AGGGCTATGC CCGTACTATG GCTGCACAAC CCTATGAAAG CCATAAAGGC GAATTGCCTA AAAGCCTTCA GGGCATGAGC TGGGATGATT ACCAACAATT CCACTTTAAG AAAAAAGCCG CACTGTGGCG CGATCAGGAC TCGGAGTTTC GTGCCGAGCT GTTCCACCTA GGGCTGTATT TCGACACGCC AATTCACATC TATGAGTTGA ATGAAGGCAA GGCCAAGTTA ATCGACTATT CGCCTTCTAT GTTCGATTAC GGCAAGTCAA AGGTGAAAGG CAGTCAGTTG CCTAAGGATC TTGGCTTTGC GGGTTTCCGT ATGCAGTTCA ATACCGATTG GGAACGTGAC GTTGTCGCTT TCCTTGGCGC CAGTTATTTC CGCGCTGTGG GTCATGAGAT GCAATACGGC CTGTCGGCTC GTGGTTTAGC GGTGGATACT GCGCTGCCAA AACCTGAAGA GTTTCCAATG TTCACCGACT TCTGGTTAGA AAAACCTAAA CCAGGATCGA ACATCACGAC TGTGTATGCC TTGTTAGACT CTCCGAGTGT GACAGGCGCT TACCGTTTCG ATATCGAGCC GGGTGAGCGT TTAAAAATGA AGGTGGATGT GGCTGTTTAT CCACGTAAAG CGATTGAACG TTTAGGTGTC GCGCCACTGA CCAGTATGTT TATGGTGGGT GAGAACGATC GCCGCACCGG TTACGACTGG CGTCCAGAAA TCCATGATAC CGATGGCTTA GCCATGCACA CGGGGAATGG TGAATGGATT TGGCGTCCGC TAGGTAACCC AGAAAACCTG CGATTCAACG CCTATAGCGA TGAAAATCCA AAAGGTTTTG GTTTACTGCA ACGTGATCGT AACTTCGATC ACTATCAGGA CGATGGCGTG TTTTATGATA AACGCCCAAG CCTGTGGATT GAACCAACCA GCAGTTGGGG CAAAGGTTCA GTGCAGTTAG TTGAAATCCC AACACTGGAT GAAACCTTCG ATAACATAGT CGCATTTTGG AATCCTGCTG AGCCGATTGT TCCGGGTCAA GAGCTGCTGT ATAGCTACAA CATGTATTGG GGCGGCATTC CACCGGTTCA ATCACCCCGT GCTCGCGTTG TTGATACCTT CACCGGGATT GGCGGCGTAG TTGGCCAGAA ACGCAAATAC TACAGTAAGC GTTTTGTGGT GGATTTCGCG GGCGGCACTT TGCCTATGAT AGGTAAAGAC ACCCAAGTAA AAGCTGTGAT CACTGCATCT GAAGGCAAAG TCGAAATTGA ATCTGCCCGT CCTCTAGCGT CCATTAATGG TTACCGCGCT ATGTTTGACG TAGTGCCCCC CGGAGACGGT ACTGAGCCGA TTAACCTGAG AGTCTATTTG GAAGTCGATG GTCAGCCATT GTCTGAAACT TGGATGTATC AGTGGAATCC GCCTGCTAAG GATGATCGTG AATTGCACAA TGCGGGTCAT CTGCAATAA
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Protein sequence | MQPNLFPEQR NVYQQSMVTV PSIEAQSSSR RGRLQRMVGS VLLTCSVLLS LSACAAGKQA SPQEGEEFSY AWLKGYARTM AAQPYESHKG ELPKSLQGMS WDDYQQFHFK KKAALWRDQD SEFRAELFHL GLYFDTPIHI YELNEGKAKL IDYSPSMFDY GKSKVKGSQL PKDLGFAGFR MQFNTDWERD VVAFLGASYF RAVGHEMQYG LSARGLAVDT ALPKPEEFPM FTDFWLEKPK PGSNITTVYA LLDSPSVTGA YRFDIEPGER LKMKVDVAVY PRKAIERLGV APLTSMFMVG ENDRRTGYDW RPEIHDTDGL AMHTGNGEWI WRPLGNPENL RFNAYSDENP KGFGLLQRDR NFDHYQDDGV FYDKRPSLWI EPTSSWGKGS VQLVEIPTLD ETFDNIVAFW NPAEPIVPGQ ELLYSYNMYW GGIPPVQSPR ARVVDTFTGI GGVVGQKRKY YSKRFVVDFA GGTLPMIGKD TQVKAVITAS EGKVEIESAR PLASINGYRA MFDVVPPGDG TEPINLRVYL EVDGQPLSET WMYQWNPPAK DDRELHNAGH LQ
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