| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_3271 |
|---|
| Symbol | |
|---|
| ID | 5755075 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 3852945 |
|---|
| End bp | 3853925 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641289604 |
|---|
| Product | RpoD family RNA polymerase sigma factor |
|---|
| Protein accession | YP_001555693 |
|---|
| Protein GI | 160876377 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.589431 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGCA TAAAAAGCAC TGCCGCAGAA GCACTAGTAG ATTTATCCGT AGACACTGTT
GACTTCGATC TTGAAAAAGA AGAAGTTGCA TCCGATTTAG TTCAAGAGCT AGGAATAGAG
CAACAGGTTC AAGATGACCT GCAAAAAAAT CTTGATGCCA CTCAACTTTA CCTAGGTGAG
ATTGGTTTTT CCCCACTGCT TAGCGCAGAA GAAGAAGTTT ACTTTTCCCG TAAAGCCTTA
AAAGGCTGCG CAAAATCCCG TAATCGCATG ATTGAAAGTA ATTTACGTCT GGTCGTAAAG
ATTGCCCGTC GTTACAACAA TCGTGGTTTA GCACTGCTTG ATCTTATCGA AGAAGGCAAC
TTAGGTTTAA TTCGTGCCGT TGAAAAATTT GACCCTGAAA GAGGTTTCCG TTTTTCAACC
TATGCGACTT GGTGGATTAG ACAAACCATT GAGCGCGCTA TTATGAATCA GACTCGTACG
ATTCGTTTGC CTATTCATGT TGTTAAAGAA CTTAACGTTT ACTTGCGTAC CGCTCGCGAG
TTAGCACAAA AACTCGATCA CGAACCAACG GCCGAAGAAA TTGCCGAAAA ACTACAAGTG
TCGAGTGCAG ATGTCAGCCG TATGCTGAAG TTGAATGAGA AAATCACCTC TGTCGATACG
CCTTTGGGGG GCGATAATGA CAAGGCGCTG CTGGATATTT TAGCCGATGA TGATAACGTT
GGCCCTGACT ATAAAGTGCA AGATGAAGAT ATTTCTAATT CAGTGGTTAA ATGGCTCAAT
GAGTTAAACA CTAAACAAAG AGAAGTGTTA GCCCGCCGTT TTGGTCTGTT AGGTTATGAA
CCTTCTACAC TCGAAGATGT GGGTGCTGAG ATTGGTTTGA CTCGTGAACG TGTACGTCAA
ATCCAAGTAG AAGCATTGAA ACGTTTACGC GACTTATTAG GATCTCAAGG TTTATCTGTT
GAAGCATTGT TTAGAAACTA A
|
|---|
| Protein sequence | MSRIKSTAAE ALVDLSVDTV DFDLEKEEVA SDLVQELGIE QQVQDDLQKN LDATQLYLGE
IGFSPLLSAE EEVYFSRKAL KGCAKSRNRM IESNLRLVVK IARRYNNRGL ALLDLIEEGN
LGLIRAVEKF DPERGFRFST YATWWIRQTI ERAIMNQTRT IRLPIHVVKE LNVYLRTARE
LAQKLDHEPT AEEIAEKLQV SSADVSRMLK LNEKITSVDT PLGGDNDKAL LDILADDDNV
GPDYKVQDED ISNSVVKWLN ELNTKQREVL ARRFGLLGYE PSTLEDVGAE IGLTRERVRQ
IQVEALKRLR DLLGSQGLSV EALFRN
|
|---|
| |