Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal195_3165 |
Symbol | |
ID | 5754957 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS195 |
Kingdom | Bacteria |
Replicon accession | NC_009997 |
Strand | + |
Start bp | 3738684 |
End bp | 3740423 |
Gene Length | 1740 bp |
Protein Length | 579 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641289486 |
Product | diguanylate cyclase |
Protein accession | YP_001555587 |
Protein GI | 160876271 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.624427 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00241131 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACAAGCA CTAAACCGCT GAAAAGCCTA AAACAAAAAA TAACCTTAGC CTTCTATATC ATAGTGGGCA TGGCGCTGTT TAATGGTGTC GTCGCCATAC TGCTGTCACA GCAACTGAAA TCAGAAATTG AGCATTTAGT GGGAGTGGAT GTTGTTAAAG TCACCACTGC ACTGCAACTG GCAAAAAACA GTGAAAAACT GCAAATCATC ACAGCACGTT TAAATCATTA TGATAATGAA CAGCAAAGAC TTCGCCTATT GAGTGAGCTC TCGGCGCAGT GGGAACTATT AATTAATGAC TCCCGATTAC TGGCCTTGAT TGAAACCGCT ACTGTCAGTA AGCAAGAATT GAATCACGCG TTAGATATCC AACTTTACTA TTTACAACAG CTGCCATTAC TTGCCGAGTT AACCGATTCC GCCCTACAAG CCAATTTACA AGCAACAAAT ATTCAAGCCA ATTTAACCTC AATGGCATCG GGATTTACCG ATGAAATGCA GACCCAATTT CACAGCATCA ATGCCGATTC AGAGCGTCAG CTTAAGCTGA AAAACTTTGA CAAGATTGCG ATGAATATCA ATACCAACCA GCAATTGTCT CAATTTAGTC ATTTGGGGGA ACACTTATTT ACCCGCCTAT CTCAGGTAAA GATTATCGAC AATCTGGTTG AACTTAACCG CACCCAGAGA GAAGCGATGC GACTACTGTT AAATATGGAG GCGATTCTCG AGGGCGTTAG CGGGGATACC AGTTTATATT TCAATTTGTT ATCGCAAATA AAACAGACCA TGGTCGGTGA AGATAACCTG TTTGAACTTT CCCGCAAGGC CATTAAAAGC ACACATATCG CCAATGCGCA TTTAGAGTAC CAAGCCGATG CCGCGCAAAT CGTCGCGACC TATACCCAAA ATCTGGTCAA CCAAGTCGAG AATGAAATCC AACAAACGGG CGGCGAACTT AAAAGCGACA GCACCGCATT TATCATATTG ATTTTCTGCA GTGGTATTCT GTATTGCTTC TTCATCTGGC TCACCAGCTG GCACTTTATC ACTAAGGGCA TTATCAAACC TGTGATGGCG ACGCGAGATG CCATGAACGC TATCGCCAAT GAAAAGCTCG ACACCCACAT GCCGGTCACT GACAACCTAG AACTGCAGCA AATGGTGAAC TCTTTAGAAA CACTAAAAAG CTATGCGGCA CAGGTTAAAG GAATGGCGGA AACTGACGGA CTAACAGGCT GCTACAACCG CCGTTATTTA GATATACAAC TCCAAAAAGA ACTCGAGTAT GCAAGGGATC ACAATATGCC CCTTGGCATC ATTCTGTTTG ATATTGATAA TTTTAAACAA TTTAACGACA GGTACGGCCA TGTCGCCGGT GATCAATGTC TGAAAAACAT TGTTAACGCC GCTAAATCCA TCTTAAAACG CCCAACTGAC ATGCTAGCCC GCTATGGCGG TGAGGAATTT ATGATAGTGC TGCCATCGAG TCATCTCGAG GAGGTCTATC AATTTGCCGA ACGATTACGG GAGAAAATCA TCAGCCTAGA AATTCCCCAT GAAGACTCTC CCCATGCGGG CATACTTACC ATCAGCGCCG GGATTACTTG CTGGCAACTA CCGCAACAGC TGGATGCCAA TAGTTTAATT AATCGAGCCG ATGAAGCCCT CTATCATGCC AAACTGACGG GGCGTAACCG CACCGAAGCC CTCCTCGGTC AACCCATTCG GTATTCCTAA
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Protein sequence | MTSTKPLKSL KQKITLAFYI IVGMALFNGV VAILLSQQLK SEIEHLVGVD VVKVTTALQL AKNSEKLQII TARLNHYDNE QQRLRLLSEL SAQWELLIND SRLLALIETA TVSKQELNHA LDIQLYYLQQ LPLLAELTDS ALQANLQATN IQANLTSMAS GFTDEMQTQF HSINADSERQ LKLKNFDKIA MNINTNQQLS QFSHLGEHLF TRLSQVKIID NLVELNRTQR EAMRLLLNME AILEGVSGDT SLYFNLLSQI KQTMVGEDNL FELSRKAIKS THIANAHLEY QADAAQIVAT YTQNLVNQVE NEIQQTGGEL KSDSTAFIIL IFCSGILYCF FIWLTSWHFI TKGIIKPVMA TRDAMNAIAN EKLDTHMPVT DNLELQQMVN SLETLKSYAA QVKGMAETDG LTGCYNRRYL DIQLQKELEY ARDHNMPLGI ILFDIDNFKQ FNDRYGHVAG DQCLKNIVNA AKSILKRPTD MLARYGGEEF MIVLPSSHLE EVYQFAERLR EKIISLEIPH EDSPHAGILT ISAGITCWQL PQQLDANSLI NRADEALYHA KLTGRNRTEA LLGQPIRYS
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