| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_3068 |
|---|
| Symbol | fliF |
|---|
| ID | 5754859 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 3639626 |
|---|
| End bp | 3641308 |
|---|
| Gene Length | 1683 bp |
|---|
| Protein Length | 560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641289391 |
|---|
| Product | flagellar MS-ring protein |
|---|
| Protein accession | YP_001555493 |
|---|
| Protein GI | 160876177 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
|---|
| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.739172 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGTCG GATCCAATTC CGACTTAGCT GACCAAGGTG TCCAGCAAGA ACATAAGTCA
GGTATGATGG GAAACCTTGG CGGTGTCGAT ATGATGCGTC AAGTAACTAT GATTTTAGCC
TTGGCGATTT GTTTGGCCTT AGCCGTATTT GTCATGCTGT GGGCACAGGA GCCTGAGTAT
CGTCCATTGG GTAAAATGGA AACTCAGGAA ATGGTTCAAG TATTAGATGT GCTTGATAAA
AATAAAGTTA AGTATCAAAT AGACGTGGAC GTGATTAAAG TCCCCGAAGA TAAATATCAA
GAAGTGAAAA TGATGCTCAG CCGCGCAGGC GTTGACAGCC CTGCGGCCAG TCAAGATTTC
TTGAATCAAG ACAGCGGCTT TGGTGTCAGC CAACGTATGG AGCAAGCCCG TCTTAAGCAC
AGCCAAGAAG AAAACCTAGC CCGTGCAATT GAGCAACTAC AAAGTGTTAG CCGCGCCAAA
GTGATCCTCG CGTTACCTAA AGAAAACGTC TTTGCTCGCA ATGCCTCAAA ACCAAGTGCG
ACTGTGGTTA TCAATACCCG TCGTGGCGGT TTAGGCCAAG GTGAAGTCGA CGCTATCGTC
GATATCGTTG CCTCTGCTGT GCAAGGTTTA GAGCCATCAC GGGTGACTGT GACCGACTCT
AACGGCCGTT TATTAAACTC CGGCAGCCAA GATGGCGCGT CTGCGACAGC CCGTCGCGAG
CTTGAATTAG TACAGCAAAA AGAAGCCGAG TATCGCACTA AGATTGAATC GATTTTGGTA
CCTATCTTAG GTCCTGATAA TTTCACCTCT CAAGTCGATG TCAGCATGGA CTTTACTGCG
GTCGAGCAAA CTTCTAAGCG TTATAACCCT GATTTACCGT CTTTACGCAG CGAAATGACC
GTTGAAAATA ATACCACTGG CGGATCTTCG GGTGGGATCC CTGGCGCGCT ATCGAATCAA
CCGCCAATGG AATCGAACAT TCCGCAAGAT GCGACTAAAG CGACCGAGTC TGTCACTGCG
GGTAATTCAC ACCGTGAGGC GACCCGTAAT TTTGAGTTAG ATACCACCAT TAGCCATACC
CGTCAGCAAG TTGGCGCCGT TCGCCGCATT AGTGTGTCGG TTGCTGTGGA CTTTAAACCC
GGTGCTGCCG GAGAAAATGG TCAAGTGGCG CGTGTTGCCC GTACTGAGCA AGAGCTGACC
AACATTCGTC GTTTACTCGA AGGGGCTGTC GGTTTTAGCT CGCAACGGGG TGATGTGTTA
GAAGTGGTCA CTGTTCCCTT TATGGATCAA TTGGTTGAAG ACTTGCCTGC ACTAGAACTG
TGGGAACAAC CTTGGTTCTG GCGTGCGATT AAGCTCGGTA TTGGTGCGCT AGTGATCCTG
GTACTGATTT TAGCTGTGGT ACGTCCTATG CTGAAACGCT TAATCTATCC TGACAGTGTG
AGTATGCCTG AGGATGGCAG ATTAGGTAAC GAATTGGCCG AAATTGAGGA CCAGTACGCG
GCAGATACGC TAGGGATGCT CAATACCCAA GAGGCGGAAT ACAGTTATGC CGATGATGGT
TCAATTCATA TCCCTAATTT GCACAAAGAT GATGATATGA TTAAAGCTAT CCGTGCGCTC
GTGGCTAATG AGCCTGAGCT CTCTACTCAA GTCGTGAAAA ACTGGTTACA AGACAATGGC
TGA
|
|---|
| Protein sequence | MIVGSNSDLA DQGVQQEHKS GMMGNLGGVD MMRQVTMILA LAICLALAVF VMLWAQEPEY
RPLGKMETQE MVQVLDVLDK NKVKYQIDVD VIKVPEDKYQ EVKMMLSRAG VDSPAASQDF
LNQDSGFGVS QRMEQARLKH SQEENLARAI EQLQSVSRAK VILALPKENV FARNASKPSA
TVVINTRRGG LGQGEVDAIV DIVASAVQGL EPSRVTVTDS NGRLLNSGSQ DGASATARRE
LELVQQKEAE YRTKIESILV PILGPDNFTS QVDVSMDFTA VEQTSKRYNP DLPSLRSEMT
VENNTTGGSS GGIPGALSNQ PPMESNIPQD ATKATESVTA GNSHREATRN FELDTTISHT
RQQVGAVRRI SVSVAVDFKP GAAGENGQVA RVARTEQELT NIRRLLEGAV GFSSQRGDVL
EVVTVPFMDQ LVEDLPALEL WEQPWFWRAI KLGIGALVIL VLILAVVRPM LKRLIYPDSV
SMPEDGRLGN ELAEIEDQYA ADTLGMLNTQ EAEYSYADDG SIHIPNLHKD DDMIKAIRAL
VANEPELSTQ VVKNWLQDNG
|
|---|
| |