| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_3056 |
|---|
| Symbol | fliR |
|---|
| ID | 5754847 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 3629007 |
|---|
| End bp | 3629804 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641289379 |
|---|
| Product | flagellar biosynthesis protein FliR |
|---|
| Protein accession | YP_001555481 |
|---|
| Protein GI | 160876165 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
|---|
| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.394206 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCTGC TGCTCGATAC CTTAATGCAG ACCATTGCCG CTTATATGTG GCCGCTGTTT
CGGGTTGCCA GTATGTTGAT GGTTATGGTG GTATTTGGGG CGGCAACTAC CCCAAGCCGC
GTACGCTTAT TATTGGCTAT GGCGATTACC TTTGCGATAG CGCCAGTCCT TCCTCCCGTT
CAAAATGCCG ATTTATTTTC ACTCAGCGCA GTATTTATCA CCGCGCAGCA AATCATTATT
GGTGTTGCCA TGGGGTTTGT GACTCAAATG GTGATGCAAG TTTTTGTATT AACCGGGCAG
ATTATCGGTA TGCAAACCAG TCTCGGTTTT GCCTCTATGG TTGATCCAGG TTCAGGTCAG
CAAACGCCGG TTATTGGTAA CTTTTTCCTG TTATTGGCGA CATTGATCTT CTTAGCCGTC
GATGGTCATC TGTTGATGAT CCGTATGTTA GTGGCGAGTT TTGAGACCCT ACCTATTTCT
AATCAAGGAT TAACACTCAC TAGCTACCGT GCTTTAGCCG ATTGGGGCTC GTATATGTTT
GGTGCGGCAT TAACTATGTC GATATCCGCG ATTATCGCCT TGTTGTTAGT CAATTTGTCC
TTCGGGGTGA TGACCCGCGC CGCGCCGCAG TTAAACATTT TCTCTATTGG TTTTCCGATC
ACTATGATTG GCGGGCTGTT TATTCTTTGG TTAACCTTAA CACCAGTCAT GGAGCATTTT
GATGAAGTAT GGGCCGCGGC TCAAGTGCTG CTTTGCGATA TGTTAGCGCT TCAATGTAAC
GCAGATGGCT TGATATGA
|
|---|
| Protein sequence | MELLLDTLMQ TIAAYMWPLF RVASMLMVMV VFGAATTPSR VRLLLAMAIT FAIAPVLPPV
QNADLFSLSA VFITAQQIII GVAMGFVTQM VMQVFVLTGQ IIGMQTSLGF ASMVDPGSGQ
QTPVIGNFFL LLATLIFLAV DGHLLMIRML VASFETLPIS NQGLTLTSYR ALADWGSYMF
GAALTMSISA IIALLLVNLS FGVMTRAAPQ LNIFSIGFPI TMIGGLFILW LTLTPVMEHF
DEVWAAAQVL LCDMLALQCN ADGLI
|
|---|
| |