Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal195_2511 |
Symbol | |
ID | 5754270 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS195 |
Kingdom | Bacteria |
Replicon accession | NC_009997 |
Strand | + |
Start bp | 2961952 |
End bp | 2965449 |
Gene Length | 3498 bp |
Protein Length | 1165 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 641288805 |
Product | transcription-repair coupling factor |
Protein accession | YP_001554939 |
Protein GI | 160875623 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00100471 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.47703 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTCACA TATCAGCCCT AACGCCGCCA GCCGTCAAAA ATGGCAATCA AATTCAGACT CTGTCCACCG TGGGCGGCGT TTGCCAAGCC GTTACACTCG CCAGTTTAGC GCGTCAACAT AAGGGGACGA CCTTAGTTGT CACCAGTGAT ACGCCAAGCG CCTTAAGCTT AGAGCTAGAA CTGAGTTATT TGCTCGGTAA AACAGGCATT AAGGTCAGAT TATTCCCTGA CCGCGAAACC TTGCCCTACG ACAGTTTTTC GCCCCATCAG GATTTGATCT CCCAGCGACT CGAAACCCTG TCGCAGCTGT CTCAAATTGA GCAAAACATC GTTATCGTGC CCGTCACGAC CTTAATGATG CGCCTGCCAC CTAAGGCCTA TTTAAGCGCT AACGTGTTTG TGCTGAAAAA AGGTGATAGC TACAAATTAC ACGATGTACG CCAGCATTTA ACCGACACTG GCTACCATTC GGTGGAGCAA GTGTATGAAC ACGGCGAGTT TGCGATTCGC GGCTCGATTC TGGATATCTT CCCCACTGGG ATGAACATGC CACTGCGCAT CGAGCTATTC GATGAAGAAG TGGAAACCAT CCGCCATTTT GATCCCGAAA CCCAACGTTC ATTGCAGCCT GTCGACTCGA TTCGCCTATT GCCCGCGAAG GAATTTCCGA CCGACAGCTC AGCCATCGAA GGCTTTAGAC AAAGGTACCG TCGCCGTTTT GAAGTCATAG TCAAAGAGCC AGAATCAGTT TATCAGCTGG TGAGCCGCAA CTTGATGCCG GCGGGGATAG AAAACTATCT GCCGCTGTTT TTTGATGACA CCGCCACCCT ATTCGATTAC TTGCCCAAGG ATACTCAGTT AGTCACTTTA GGGGATATCG AAAAGTCGGC GCGCGCGCAT CTGCAAGAAG TCGAACACCG CTATCAAGAC AGGCGCGTCG ATCCACTGCG GCCGCTACTG GCACCTAAAG AGCTGTATTT ACTCATCGAA GAGTTATTTG CCGCCTTTAA ACCGCTGCCA CGTTACCAGA TGCAAGTGCC GACGGATGGC GCTGAAGCGA CAAAAGCTTT GGTGATTGCC GCCAGCACCC TGCCCGACAT CAGCGCCAAC CATAAATTAA AGCAACCACT GTTAGCGCTG CAAGATTATG CCAGCAGCGC CAAACGCATG TTGTTTAGTG CCGAGTCCGA GGGTCGCCGC GAAGCGCTGC TTGAATTGCT CGCAAAAATT CAGTTAAAAC CTGCGCTGTT TAACCATTTT GATGAATTTA TTCAAAGTGA TGCCAAGTTA GGGCTCATCG TGTCGCCGCT GTCACGCGGT TGTTTACTGC AGATCAGCGC TAAAGATGGC ATCAGTATCA TTTGTGAAAC TGAGCTCTTC GGCCATCGAA TTTCCCAGCA ACGTCGCCGT GAAAAACAGC GTCAGATCAG TAACGATGCC CTGATTAAAA ACTTGGCCGA ACTCAAAGTC GGCCAGCCCA TAGTGCATTT AGAACACGGT GTTGCCCTCT ATAAAGGCTT AGTCACGCTA GATACAGGCG GACTGGTCGC CGAATACCTG CAATTGGAAT ACGCCGGCGG CGATAAACTG TATGTGCCAG TGTCTTCATT GCACCTTATC AGCCGCTACA GTGTTGGCGC CGACGAAGAC GCCCACTTAA ATAAACTCGG CAATGAGACC TGGGCTAAAG CCAAGAAAAA AGCCATTGAA AAAATCCGCG ACGTCGCGGC CGAGCTGCTC GATGTATATG CCCGTCGCCA ATCTCGTCCC GGCGAAAGCT GCGAGATTGA CGAAGAAGAA TACGCCCAAT TCGCTCGCGG TTTCCCCTTC GAGGAAACCG TCGATCAAGA AAGCGCCATT ATCGCCGTGT TAGCCGATAT GCAATCGCCG ACCGCAATGG ACAGATTAGT CTGTGGCGAT GTGGGCTTTG GTAAAACCGA AGTCGCCATG CGCGCCGCCT TTGTGGCCGT CAACGCCGGT AAGCAAGTGG TCGTGCTGGT CCCGACCACA TTGCTTGCCC AGCAACACTA TGAAAACTTT AAAGACAGGT TTGCCGACTG GCCCGTAGTC ACCGAAGTGA TGTCACGCTT TCGCACCGCT AAAGAGCAGA CTCAAGTGCT GCAGCAATTG GAAGAAGGCA AAGTCGATAT CGTTATCGGT ACTCACAAGT TATTGCAATC TGAGGCCAAG TTTGAAAACT TAGGCCTGCT GATCATCGAC GAAGAACACA GATTCGGTGT ACGTCAAAAA GAGAAAATCA AGGCCCTGCG TGCCAACGTG GATATCCTAA CCCTGACCGC AACGCCTATT CCACGGACCT TAAATATGGC CATGTCGGGC ATGCGCGATT TATCGATTAT CGCCACCCCG CCCGCCAAAC GTTTAGCGGT AAAAACCTTT GTGCGCGAAT CCGATCCTGC AACCGTGCGC GAGGCCATTT TGCGGGAAAT TCTCCGTGGC GGCCAAGTGT ATTACCTGCA CAATAATGTT GAAAGTATTG AAAAATGTGC CCAAGGCATT ATCGATTTAC TGCCAGAAGC GCGGGTAGTC GTCGCCCACG GTCAAATGCG TGAGCGCGAT CTTGAGCGGG TGATGTCTGA CTTTTATCAC CAAAGATTCA ATGTGTTAGT CTGTACTACT ATTATCGAAA CTGGTATCGA CGTCCCGAGT GCCAACACCA TTATTATTGA GCGCGCCGAT ACCTTTGGTC TGGCGCAGTT ACACCAATTA CGCGGCCGCG TCGGACGCTC GCACCATCAG GCTTATGCCT ATTTGATGAC GCCGCATCCT AAACGTATGA CTCCCGATGC GCGTAAGCGT TTAGAAGCCA TTGATGCCCT TGAAGATCTC GGTGCAGGCT TTATGCTCGC GACCCAAGAT TTGGAGATCC GCGGTGCAGG TGAACTCTTA GGTGATGAGC AGAGCGGCCA TATTTCGAAA ATTGGTTTTA GCTTATACAT GGAAATGCTC GAAGCGGCAG TCAAAGCTTT AAAACAAGGC AAAGAGCCAT CGCTGGCGCA AATGCTGAAT CAACAATGTG AAATTGAACT GCGTATCCCC GCCCTACTGC CTGAGGCCTA TGTGAGCGAC GTGAATATTC GTCTATCGCT CTATAAACGC ATCGCAGGTT GCGAAACCGA AGCGGCGCTG GATGAACTAA AAGTCGAATT GATCGACCGT TTTGGCCTAT TACCCGAACC GACGCGCAAC TTAATGGAAA TGACCCTCTA TAAACATGAG GCGACTCGCT TAGGGGCGAC TAAAATAGAA GTGCACAGTA AAGGTGGCAG CATCGAATTT AGTCATGATC ACGTCATCGA TCCTATGTTT ATTATTGGAT TACTCCAAAG CCAGCCACAA ATCTATCGAA TGGAAGGACC GAATAAGTTA AAGTTCAGCC TTGCGGCCGA AACCAGTAAA GACAGGCTCG CTTTGGTCAA ACTCTTGCTC GAACAACTAT CTCAACATCA ATCGCAACAT CGTCTTGGAG ATAAATAG
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Protein sequence | MTHISALTPP AVKNGNQIQT LSTVGGVCQA VTLASLARQH KGTTLVVTSD TPSALSLELE LSYLLGKTGI KVRLFPDRET LPYDSFSPHQ DLISQRLETL SQLSQIEQNI VIVPVTTLMM RLPPKAYLSA NVFVLKKGDS YKLHDVRQHL TDTGYHSVEQ VYEHGEFAIR GSILDIFPTG MNMPLRIELF DEEVETIRHF DPETQRSLQP VDSIRLLPAK EFPTDSSAIE GFRQRYRRRF EVIVKEPESV YQLVSRNLMP AGIENYLPLF FDDTATLFDY LPKDTQLVTL GDIEKSARAH LQEVEHRYQD RRVDPLRPLL APKELYLLIE ELFAAFKPLP RYQMQVPTDG AEATKALVIA ASTLPDISAN HKLKQPLLAL QDYASSAKRM LFSAESEGRR EALLELLAKI QLKPALFNHF DEFIQSDAKL GLIVSPLSRG CLLQISAKDG ISIICETELF GHRISQQRRR EKQRQISNDA LIKNLAELKV GQPIVHLEHG VALYKGLVTL DTGGLVAEYL QLEYAGGDKL YVPVSSLHLI SRYSVGADED AHLNKLGNET WAKAKKKAIE KIRDVAAELL DVYARRQSRP GESCEIDEEE YAQFARGFPF EETVDQESAI IAVLADMQSP TAMDRLVCGD VGFGKTEVAM RAAFVAVNAG KQVVVLVPTT LLAQQHYENF KDRFADWPVV TEVMSRFRTA KEQTQVLQQL EEGKVDIVIG THKLLQSEAK FENLGLLIID EEHRFGVRQK EKIKALRANV DILTLTATPI PRTLNMAMSG MRDLSIIATP PAKRLAVKTF VRESDPATVR EAILREILRG GQVYYLHNNV ESIEKCAQGI IDLLPEARVV VAHGQMRERD LERVMSDFYH QRFNVLVCTT IIETGIDVPS ANTIIIERAD TFGLAQLHQL RGRVGRSHHQ AYAYLMTPHP KRMTPDARKR LEAIDALEDL GAGFMLATQD LEIRGAGELL GDEQSGHISK IGFSLYMEML EAAVKALKQG KEPSLAQMLN QQCEIELRIP ALLPEAYVSD VNIRLSLYKR IAGCETEAAL DELKVELIDR FGLLPEPTRN LMEMTLYKHE ATRLGATKIE VHSKGGSIEF SHDHVIDPMF IIGLLQSQPQ IYRMEGPNKL KFSLAAETSK DRLALVKLLL EQLSQHQSQH RLGDK
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