Gene Sbal195_0716 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbal195_0716 
Symbol 
ID5752433 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS195 
KingdomBacteria 
Replicon accessionNC_009997 
Strand
Start bp867356 
End bp868834 
Gene Length1479 bp 
Protein Length492 aa 
Translation table11 
GC content48% 
IMG OID641286978 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_001553154 
Protein GI160873838 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0421657 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.335083 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCGT CACTCCAGCT CAAACTGGGT CAACAGTTAA CCATGACGCC ACAATTACAA 
CAGGCCATCC GTCTGTTGCA ACTGTCGTCA TTAGAACTGC AGCAAGAGAT CCAGCAAGCC
TTAGATTCTA ATCCCCTTCT CGAGCTGGAA GAGGATCAAT TCGACGCCAC TAAAGACCCT
GTAAACCAAA CGCTATCCGA TACGGATTTC AGTGAATCTA GCACTCTGCC GCCAGAACAA
GACAGCTCCA CCATAGACAC GGCAGAGTCG CTCACGAAAG AGTCCATGCC CGACGAACTC
CCCATGGACA CCACTTGGGA TGAAGTGTTC ACCGCCTCCC CCAATTCTGG CCCCGGCGGC
AGTCGTGAAG ACGATATGCC CTTCCAAGGT GAGACCAGTG AAGGCTTGTA TGAACACTTA
GAATGGCAAA AAAACCTCAC ACCGTTTTCT GAAACCGATT TAGCCATTGC CACCGCCATT
ATTGATGCCA TCGACGATCA AGGCTATCTC ACCCAAAGCA CTGACGAAAT CCTCGAAGCC
ATGGGCAATT CTGAGGTTGA GCTCGACGAA GTCGAAGCCG TACTCAAGCG CATTCAACAT
TTTGATCCCA TTGGTGTTGC CGCCCGCGAT TTAAGCGAGT GCCTGTTGAT CCAACTGTCG
CATTTCGCCG CTGACACGCC CAACCTAGAA AACGCCCGCA TGCTGATCAA AGATCATTTA
GATCTGATCG CCGCCCGCGA TTTTAGATTG TTGATGCGTA AGACTAAATT AAAAGAGGAT
GAATTAAGAG ACGGCATCGC GCTTATCCAA ACCCTCAATC CCCGCCCAGG TTTATTGATT
ACGCCCAACG ATGACGAATA CGTCATCCCA GATGTGTCAG TGTCGAAGAA AAATGGCCGC
TGGGTGGTTG AGCTGAATCC TGACTGCATG CCAAAAATCA ATGTAAATCA ACATTATGCT
TCGATGGCGC GCAGCACTAA AAGCCAAGCC GATAGCCAAT TTATTCGTGG CCATCTGCAA
GAGGCTAAAT GGTTTATCAA GAGTTTAGAG AGCCGTAATG ATACCCTGTT GAAGGTGGCG
AACTGTATCG TCCAATATCA GCAAGGTTTC TTTGAATACG GTGAAGAAGC CATGAAACCT
ATGGTGCTTA ACGATATTGC CGAAGCGGTA GAAATGCATG AGTCGACCAT CTCACGAGTG
ACGACACAGA AATACATGCA TACCCCTAAG GGACTTTTTG AACTAAAATA CTTCTTCTCT
AGCCACGTCG GTACTGACGA TGGTGGGGAG TGCTCATCCA CAGCAATCAG AGCCTTCATT
AAGAAACTGG TTGCAGCGGA AAACCAGAAA AAACCATTGA GCGACAGTAA GATGGCACAG
CTTCTGGCAG AACAAGGGAT CAACGTAGCC CGCAGAACCA TTGCGAAGTA CCGAGAGGCT
ATGCTCATTC CGCCTTCTAA TCAGCGTAAA AGTTTATAA
 
Protein sequence
MKASLQLKLG QQLTMTPQLQ QAIRLLQLSS LELQQEIQQA LDSNPLLELE EDQFDATKDP 
VNQTLSDTDF SESSTLPPEQ DSSTIDTAES LTKESMPDEL PMDTTWDEVF TASPNSGPGG
SREDDMPFQG ETSEGLYEHL EWQKNLTPFS ETDLAIATAI IDAIDDQGYL TQSTDEILEA
MGNSEVELDE VEAVLKRIQH FDPIGVAARD LSECLLIQLS HFAADTPNLE NARMLIKDHL
DLIAARDFRL LMRKTKLKED ELRDGIALIQ TLNPRPGLLI TPNDDEYVIP DVSVSKKNGR
WVVELNPDCM PKINVNQHYA SMARSTKSQA DSQFIRGHLQ EAKWFIKSLE SRNDTLLKVA
NCIVQYQQGF FEYGEEAMKP MVLNDIAEAV EMHESTISRV TTQKYMHTPK GLFELKYFFS
SHVGTDDGGE CSSTAIRAFI KKLVAAENQK KPLSDSKMAQ LLAEQGINVA RRTIAKYREA
MLIPPSNQRK SL