Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal195_0500 |
Symbol | |
ID | 5752217 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS195 |
Kingdom | Bacteria |
Replicon accession | NC_009997 |
Strand | + |
Start bp | 572371 |
End bp | 574314 |
Gene Length | 1944 bp |
Protein Length | 647 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641286762 |
Product | regulatory protein CsrD |
Protein accession | YP_001552938 |
Protein GI | 160873622 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTCA CCCGAATGTT AACTACAAAA TTAACCAGCT TTTGGTTAAT GTCATTAGCC GCTATTGCCT TCGTATTTTT GCTGAGCGCT ATGATGAGTT TCGTGCAGCT GACCTATAAA TTTCAGCAGC AGAAAGTCGC CGAACTCGAA ACTATGTTAG TGGACCAATA TCAACACCAA CCCGATTGGG ATTTGGAAGC TTGGCTGCCG CCCATGCTGC TCGCCTACAA TGCTGTTGAT TTTCGGCTGA CCTTGAAAGA TGAAGTGATC TTTGCCTATG AAGGCAATCT CACTACGCAA AATGCCATGG TGTATGACCA TGTGTTAGAT CCAAAATCTG GTCTGCGTAT GCAGCTGACC TTGACCCAAC CCTTCGAGCA TTACACTTTT AGTTGGTATG AAATCCTCAT CCTGTTGGTC GGTGTGTTAG CTGTGGCTGC CTTAGTGCGT TTTGGCTATT TATGGTTTTC CCAGCAATTG GATGGCATTG AAGAATTAGC CTTACGCAGT CGATTGATCT TGCAAGGTAA GCACGAGCAA GCACTCGCGA CTCCCGGAAA TGGCAAGCCA AGGCTGATTA ACCGTGCTTT GACCAAGTTG TTAGAAGAAT TACAAGACGC ACAAAAAGAG CGCGGTCGTT TTGACAAGTT CATTCGTTCT AATACCTTTC TCGATGCGGA AACGCGCATT GGTAATCGAC TTTTCTTAAA TAACCGTCTC GACGCCCTTA GTCATAATCA GGCGATGCTC GCCCATGGGG TGATTTATTT ATTAGAGATG GATGATCTGG ATTTACTGCA GCAATCCCAA GGTGAAGCGG TAACCAAAGA GTTATTAAAC TCAACAGTTA ACGCGATAAG CCAACTGTTA CAAACCCAAG CTAACAGTAT TTTTGCCCGT CGTTCCCACA ATCAATTTGC CATAGTCGTG CCGCAAATCT CGTTAATCGA AGCTGACCAA TTTGCCAGTA AGTTGCTTAA GATATGTTTG AGCCAGCCTT TACCCGAAGT CGAGAATAGC GATAACTTTT TCCACCTCGG ATGCGCTTAT TTTACCGCAG GCGACAATGC GGCGCAGTTA ATTGAAGAAG CCGATATGGC TTTGAGGGCG GCACAATTAC AGGGTAACAG TAATTGGTTT ATGTACGACA AAGGCGCGAT TGATGAAGAG TTTGCTAAAG GCTCGGTGCG TTGGCGTAGC TTTTTAGAAA ACGCGTTAGT GCAAAGGCGA TTCTTCCCCT TTAGCCAGCC GATAATTGAT TCAGATGGTA ATGAGCACCA TAAAGAGATA TTTACTCGGG CGCGGGATAA TCAAGGAGCG TTAATTCGTG CCACACTGTT TATTCCAATG GCGAATAAAT GTGGTTTAAT GCCGCAAGTC GAACGGCAAA TTATTGAGCG GGTATTATTG TTACTGTCGA ATGAATTAGC GGACGGCGTG TCGAATACTC AAAAAAATAA GAAATCAGCG CCACAGATAT ACAGTATAAA TCTGAGTTTG GATTCGCTAA TGAGTCGAGC TTTTACCCAA TGGCTAAAAA CGACGCTGTT AGAATATCGT CATCTGACCA CGCGACTGAT TTTCGAAGTG TCGGAAGATA TCGTTATTCA ACATCAAGAA AAGTTGCAGC CTAAATTAGA TATGATCCGT AAAATGGGCG CGAGATTATG CGTTGATCAT GTAGGCCAGC AGGTCGTTGG CACTTACTAT ATTCGTGAAT GTCATTTTGA TTTAATTAAG CTACATAGAT CGATTGTGCG GCATATTCAT TTACGCCCAG AAAACCAATT ATTCATCCGT AGCTTGATTG GCGGTTTGTA TCGAACGGAA GTGCAAGTTT GTGCCGAAGG GGTTGAAGTC TTCGAAGAAT GGCAGACACT GCAAATCCTT GGCGTTGGCG CAGCGCAGGG AATGTATTTC AGTGACCCCA TAGAGGCTAA GTAA
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Protein sequence | MKFTRMLTTK LTSFWLMSLA AIAFVFLLSA MMSFVQLTYK FQQQKVAELE TMLVDQYQHQ PDWDLEAWLP PMLLAYNAVD FRLTLKDEVI FAYEGNLTTQ NAMVYDHVLD PKSGLRMQLT LTQPFEHYTF SWYEILILLV GVLAVAALVR FGYLWFSQQL DGIEELALRS RLILQGKHEQ ALATPGNGKP RLINRALTKL LEELQDAQKE RGRFDKFIRS NTFLDAETRI GNRLFLNNRL DALSHNQAML AHGVIYLLEM DDLDLLQQSQ GEAVTKELLN STVNAISQLL QTQANSIFAR RSHNQFAIVV PQISLIEADQ FASKLLKICL SQPLPEVENS DNFFHLGCAY FTAGDNAAQL IEEADMALRA AQLQGNSNWF MYDKGAIDEE FAKGSVRWRS FLENALVQRR FFPFSQPIID SDGNEHHKEI FTRARDNQGA LIRATLFIPM ANKCGLMPQV ERQIIERVLL LLSNELADGV SNTQKNKKSA PQIYSINLSL DSLMSRAFTQ WLKTTLLEYR HLTTRLIFEV SEDIVIQHQE KLQPKLDMIR KMGARLCVDH VGQQVVGTYY IRECHFDLIK LHRSIVRHIH LRPENQLFIR SLIGGLYRTE VQVCAEGVEV FEEWQTLQIL GVGAAQGMYF SDPIEAK
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