| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4844 |
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| Symbol | treC |
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| ID | 6269416 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | + |
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| Start bp | 4514975 |
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| End bp | 4516630 |
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| Gene Length | 1656 bp |
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| Protein Length | 551 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641728582 |
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| Product | trehalose-6-phosphate hydrolase |
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| Protein accession | YP_001882976 |
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| Protein GI | 187733088 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | [TIGR02403] alpha,alpha-phosphotrehalase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.257097 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTAATC CTCCCCACTG GTGGCAAAAC GGCGTTATCT ACCAGATTTA TCCAAAGAGT
TTTCAGGACA CCACGGGTAG CGGTACCGGC GATTTACGTG GCGTTATCCA ACGCCTGGAC
TATCTGCATA AACTGGGCGT TGATGCCATC TGGCTAACCC CCTTTTATGT CTCTCCCCAG
GTCGATAACG GTTACGACGT AGCGAACTAT ACGGCGATTG ATCCCACCTA CGGCACGCTG
GACGATTTTG ACGAACTGGT GACGCAGGCA AAATCGCGCG GGATTCGTAT CATTCTCGAT
ATGGTGTTTA ACCATACCTC TACCCAACAT GCCTGGTTTC GCGAGGCGCT GAACAAAGAA
AGCCCTTACC GCCAGTTTTA TATCTGGCGC GATGGAGAAC CAGAAACGCC ACCGAACAAC
TGGCGTTCAA AATTTGGCGG TAGTGCGTGG CGCTGGCATG CGGAAAGCGA ACAGTACTAT
TTGCATCTCT TTGCACCAGA ACAGGCGGAT CTCAACTGGG AGAATCCAGC GGTACGCGCA
GTGCTGAAAA AAGTCTGTGA GTTCTGGGCC GATCGTGGGG TCGACGGGTT GCGCCTGGAT
GTGGTGAATC TGATCTCCAA AGACCCGCGT TTCCCTGATG ACCTGGATGG CGACGGGCGT
CGCTTCTACA CCGACGGGCC ACGAGCACAC GAGTTTTTGC ACGAGATGAA CCGCGATGTG
TTTACGCCAC GCGGGTTAAT GACCGTAGGT GAAATGTCCT CCACCAGCCT TGAGCATTGC
CAGCGATACG CGGCACTGAC AGGCAGTGAA TTGTCGATGA CCTTTAATTT TCATCACCTG
AAGGTCGATT ATCCCGGTGG TGAAAAATGG ACGCTGGCTA AACCTGACTT TGTGGCGTTG
AAAACATTGT TCCGCCACTG GCAACAAGGA ATGCACAACG TAGCATGGAA TGCCTTGTTC
TGGTGTAACC ACGATCAGCC GCGCATTGTT TCTCGCTTTG GTGATGAAGG TGAATACCGC
GTGCCTGCGG CAAAAATGCT GGCGATGGTG CTGCATGGCA TGCAGGGAAC GCCGTATATC
TACCAGGGCG AAGAGATTGG CATGACCAAC CCGCATTTCA CGCGCATTAC TGACTATCGC
GACGTAGAGA GCCTCAATAT GTTTGCCGAG CTGCGCAACG ATGGTCGTGA TGCCGACGAG
TTATTGGCAA TCCTTGCCAG TAAATCCCGT GACAACAGCC GCACGCCCAT GCAATGGAGC
AACGGCGATA ATGCCGGATT TACGGCTGGC GAACCGTGGA TTGGCCTAGG TGATAACTAT
CAACAAATCA ACGTAGAAGC CGCGCTGGCC GATGATTCCT CGGTGTTTTA CACCTACCAA
AAGTTAATCG CACTGCGTAA GCAGGAAGCC ATCCTGACAT GGGGCAATTA CCAGGATCTG
CTGCCAAACA GCCCTGTATT GTGGTGCTAT CGCCGTGAAT GGAAGGGGCA AACCTTGCTG
GTCATTGCCA ACCTTAGCCG TGAGATCCAA CCCTGGCAGC CAGGGCAAAT GCGCGGCAAC
TGGCAGCTTG TGATGCATAA CTACGAAGAA GCCTCACCAC AACCCTGTGC CATGAATTTA
CGGCCTTTTG AGGCTGTCTG GTGGTTACAG AAGTAA
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| Protein sequence | MTNPPHWWQN GVIYQIYPKS FQDTTGSGTG DLRGVIQRLD YLHKLGVDAI WLTPFYVSPQ
VDNGYDVANY TAIDPTYGTL DDFDELVTQA KSRGIRIILD MVFNHTSTQH AWFREALNKE
SPYRQFYIWR DGEPETPPNN WRSKFGGSAW RWHAESEQYY LHLFAPEQAD LNWENPAVRA
VLKKVCEFWA DRGVDGLRLD VVNLISKDPR FPDDLDGDGR RFYTDGPRAH EFLHEMNRDV
FTPRGLMTVG EMSSTSLEHC QRYAALTGSE LSMTFNFHHL KVDYPGGEKW TLAKPDFVAL
KTLFRHWQQG MHNVAWNALF WCNHDQPRIV SRFGDEGEYR VPAAKMLAMV LHGMQGTPYI
YQGEEIGMTN PHFTRITDYR DVESLNMFAE LRNDGRDADE LLAILASKSR DNSRTPMQWS
NGDNAGFTAG EPWIGLGDNY QQINVEAALA DDSSVFYTYQ KLIALRKQEA ILTWGNYQDL
LPNSPVLWCY RREWKGQTLL VIANLSREIQ PWQPGQMRGN WQLVMHNYEE ASPQPCAMNL
RPFEAVWWLQ K
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