| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4710 |
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| Symbol | rnr |
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| ID | 6271574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | + |
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| Start bp | 4402204 |
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| End bp | 4404645 |
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| Gene Length | 2442 bp |
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| Protein Length | 813 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641728475 |
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| Product | exoribonuclease R |
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| Protein accession | YP_001882870 |
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| Protein GI | 187732115 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACAAG ATCCTTTCCA GGAACGCGAA GCTGAAAAAT ACGCGAATCC CATCCCTAGT
CGGGAATTTA TCCTCGAACA TTTAACCAAA CGTGAAAAAC CGGCCAGCCG TGATGAGCTG
GCGGTAGAAC TGCACATTGA AGGCGAAGAG CAGCTTGAAG GCCTGCGTCG CCGCCTGCGC
GCGATGGAGC GCGATGGTCA ACTGGTCTTC ACTCGTCGTC AGTGCTATGC GCTGCCGGAA
CGCCTCGACC TGGTGAAAGG TACCGTTATT GGCCACCGTG ATGGCTACGG CTTTCTGCGG
GTTGAAGGGC GTAAAGATGA TTTGTATCTC TCCAGCGAGC AGATGAAAAC CTGCATTCAT
GGCGATCAGG TGCTGGCTCA GCCGCTGGGT GCTGACCGTA AAGGTCGTCG TGAAGCGCGT
ATTGTCCGCG TACTGGTGCC AAAAACCAGC CAGATTGTTG GTCGCTACTT TACCGAAGCG
GGCGTCGGCT TTGTGGTTCC TGACGATAGC CGTCTGAGCT TCGATATCTT AATCCCGCCC
GATCAGATCA TGGGCGCGCG GATGGGCTTT GTGGTGGTTG TTGAACTGAC CCAACGCCCG
ACTCGCCGTA CCAAAGCGGT GGGTAAAATC GTCGAAGTGC TGGGCGACAA TATGGGCACC
GGCATGGCGG TTGATATCGC TTTGCGTACC CATGAAATTC CGTACATCTG GCCGCAGGCT
GTTGAGCAAC AGGTTGCCGG GCTGAAAGAA GAAGTGCCGG AAGAAGCAAA AGCGGGCCGT
GTCGATTTGC GCGATTTACC GCTGGTCACC ATTGATGGCG AAGACGCCCG TGACTTTGAC
GATGCGGTTT ACTGCGAGAA AAAACGCGGC GGCGGCTGGC GTTTATGGGT CGCGATTGCC
GACGTCAGCT ACTATGTGCG TCCGCCAACG CCGCTGGATA GAGAAGCGCG TAATCGTGGT
ACGTCGGTGT ACTTCCCTTC GCAGGTTATC CCGATGCTGC CGGAAGTGCT CTCTAACGGT
CTGTGCTCGC TCAATCCGCA GGTAGACCGC CTGTGTATGG TGTGCGAGAT GACGGTTTCG
TCGAAAGGCC GCCTGACGGG CTACAAATTC TACGAAGCGG TGATGAGCTC TCACGCGCGT
CTGACCTACA CCAAAGTCTG GCATATTCTG CAGGGCGATC AGGATCTGCG CGAGCAGTAC
GCTCCGCTGG TTAAGCATCT CGAAGAGTTG CATAACCTCT ATAAAGTGCT GGATAAAGCC
CGTGAAGAAC GTGGCGGGAT CTCATTTGAG AGCGAAGAAG CGAAGTTTAT TTTCAACGCT
GAATGCCGTA TTGAGCGTAT CGAACAGACT CAGCGTAACG ACGCACACAA GTTAATTGAA
GAGTGCATGA TTCTGGCGAA TATCTCGGCG GCGCGTTTCG TTGAGAAAGC CAAAGAACCA
GCATTGTTCC GTATTCACGA CAAGCCGAGC ACCGAAGCGA TTACCTCTTT CCGTTCAGTA
CTGGCGGAGC TGGGGCTGGA ACTGCCGGGC GGTAACAAGC CGGAACCGCG TGACTACGCG
GAGCTGCTGG AGTCGGTTGC CGAGCGTCCT GATGCAGAAA TGCTGCAAAC CATGCTGCTG
CGCTCGATGA AACAGGCGAT TTACGATCCA GAAAACCGTG GTCACTTTGG CCTGGCATTG
CAGTCCTATG CGCACTTTAC TTCGCCGATT CGTCGTTATC CAGACCTGAC GCTGCACCGC
GCCATTAAAT ATCTGCTGGC GAAAGAGCAG GGGCATCAGG GCAACACCAC TGAAACCGGC
GGCTACCATT ATTCGATGGA AGAAATGCTG CAACTGGGTC AGCACTGTTC GATGGCGGAA
CGTCGTGCCG ACGAAGCAAC GCGCGATGTG GCTGACTGGC TGAAGTGTGA CTTCATGCTC
GACCAGGTAG GTAACGTCTT TAAAGGCGTA ATTTCCAGCG TCACTGGCTT TGGATTCTTT
GTCCGTCTGG ACGACTTATT CATTGATGGT CTGGTCCATG TCTCTTCGCT GGACAATGAC
TACTATCGCT TTGACCAGGT AGGGCAACGG CTGATGGGTG AATCCAGCGG CCAGACTTAT
CGTCTGGGCG ATCGCGTGGA AGTTCGCGTC GAAGCGGTTA ATATGGACGA GCGCAAAATC
GACTTTAGCC TGATCTCCAG CGAACGCGCA CCGCGCAACG TCGGTAAAAC GGCGCGCGAG
AAAGCGAAAA AAGGCGATGC AGGTAAAAAA GGCGGCAAGC GTCGTCTGGT CGGTAAAAAG
GTAAACTTTG AGCCAGACAG CGCCTTCCGC GGTGAGAAAA AAACGAAGCC GAAAGCAGCG
AAGAAAGACG CGAGAAAAGC GAAAAAGCCA TCGGCGAAAA CGCAGAAAAT AGCTGCTGCG
ACCAAAGCGA AGCGTGCGGC GAAGAAAAAA GTGGCAGAGT GA
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| Protein sequence | MSQDPFQERE AEKYANPIPS REFILEHLTK REKPASRDEL AVELHIEGEE QLEGLRRRLR
AMERDGQLVF TRRQCYALPE RLDLVKGTVI GHRDGYGFLR VEGRKDDLYL SSEQMKTCIH
GDQVLAQPLG ADRKGRREAR IVRVLVPKTS QIVGRYFTEA GVGFVVPDDS RLSFDILIPP
DQIMGARMGF VVVVELTQRP TRRTKAVGKI VEVLGDNMGT GMAVDIALRT HEIPYIWPQA
VEQQVAGLKE EVPEEAKAGR VDLRDLPLVT IDGEDARDFD DAVYCEKKRG GGWRLWVAIA
DVSYYVRPPT PLDREARNRG TSVYFPSQVI PMLPEVLSNG LCSLNPQVDR LCMVCEMTVS
SKGRLTGYKF YEAVMSSHAR LTYTKVWHIL QGDQDLREQY APLVKHLEEL HNLYKVLDKA
REERGGISFE SEEAKFIFNA ECRIERIEQT QRNDAHKLIE ECMILANISA ARFVEKAKEP
ALFRIHDKPS TEAITSFRSV LAELGLELPG GNKPEPRDYA ELLESVAERP DAEMLQTMLL
RSMKQAIYDP ENRGHFGLAL QSYAHFTSPI RRYPDLTLHR AIKYLLAKEQ GHQGNTTETG
GYHYSMEEML QLGQHCSMAE RRADEATRDV ADWLKCDFML DQVGNVFKGV ISSVTGFGFF
VRLDDLFIDG LVHVSSLDND YYRFDQVGQR LMGESSGQTY RLGDRVEVRV EAVNMDERKI
DFSLISSERA PRNVGKTARE KAKKGDAGKK GGKRRLVGKK VNFEPDSAFR GEKKTKPKAA
KKDARKAKKP SAKTQKIAAA TKAKRAAKKK VAE
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