Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E4553 |
Symbol | dinF |
ID | 6268390 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 4255194 |
End bp | 4256573 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641728335 |
Product | DNA-damage-inducible SOS response protein |
Protein accession | YP_001882733 |
Protein GI | 187734072 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 50 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCGCCAG GCGTCGCGGT TTGTTTTTCA TCTCTCTTCA TCAGGCTTGT CTGCATGGCA TTCCTCACTT CATCTGATAA AGCACTCTGG CATCTCGCCT TACCCATGAT TTTCTCCAAT ATCACCGTTC CGTTGCTGGG ACTGGTCGAT ACGGCGGTAA TTGGTCATCT TGATAGTCCA GTTTATTTGG GCGGCGTGGC GGTTGGTGCA ACGGCGACCA GCTTTCTCTT TATGCTGTTG CTGTTTTTAC GCATGAGCAC CACCGGGCTG ACTGCGCAGG CTTATGGTGC CAAAAATCCT CAGGCATTAG CCCGTGCGCT GGTGCAACCG TTGCTGTTGG CGTTGGGGGC AGGGGCGTTA ATTGCGCTGC TGCGTACACC GATTATCGAT CTGGCACTGC ATATTGTTGG CGGTAGTGAA GCAGTCCTGG AACAGGCGCG GCGCTTTCTT GAAATCCGCT GGTTAAGCGC ACCGGCGTCG CTGGCGAATC TGGTATTACT TGGTTGGTTA CTCGGCGTGC AATATGCCCG TGCGCCAGTA ATTTTGTTAG TGGTCGGCAA TATCCTCAAC ATTGTGCTGG ATGTCTGGCT GGTGATGGGG CTGCATATGA ACGTGCAGGG CGCGGCGCTG GCGACGGTTA TTGCGGAATA TGCAACATTG CTGATTGGTC TGCTAATGGT GCGTAAAATC CTCAAACTAC GCGGAATTTC CGGCGAAATG CTGAAAACTG CCTGGCGAGG AAACTTCCGT CGCTTGCTGG CGCTTAACCG CGATATCATG CTGCGTTCGC TGTTGTTGCA ACTCTGTTTC GGCGCGATCA CCGTACTTGG TGCGCGACTG GGGAGTGACA TTATCGCTGT TAACGCGGTT CTGATGACGC TACTCACCTT TACCGCCTAT GCGCTGGATG GTTTTGCCTA CGCGGTTGAA GCGCATTCCG GTCAGGCGTA CGGTGCGCGC GACGGTAGCC AGTTGCTGGA TGTCTGGCGG GCAGCGTGCC GCCAGTCGGG GATCGTAGCG TTACTGTTTT CGGTAGTTTA TTTGCTGGCA GGGGAACACA TCATTGCGTT GCTGACGTCG TTAACCCAGA TTCAGCAGCT GGCCGACCGC TATCTTATCT GGCAGGTGAT TTTGCCGTTG GTTGGCGTCT GGTGTTATCT GCTGGACGGC ATGTTTATAG GCGCAACGCG CGCAGCCGAA ATGCGTAACA GTATGGCGGT GGCCGCCGCA GGTTTTGCGT TGACGCTCCT TACGCTGCCG TGGCTGGGTA ATCATGCTTT GTGGCTGGCG TTAACCGTCT TTCTGGCGTT GCGCGGGCTT TCTCTGGCGG CTATCTGGCG GCGTCACTGG CGCAACGGTA CCTGGTTTGC CGCAACGTGA
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Protein sequence | MPPGVAVCFS SLFIRLVCMA FLTSSDKALW HLALPMIFSN ITVPLLGLVD TAVIGHLDSP VYLGGVAVGA TATSFLFMLL LFLRMSTTGL TAQAYGAKNP QALARALVQP LLLALGAGAL IALLRTPIID LALHIVGGSE AVLEQARRFL EIRWLSAPAS LANLVLLGWL LGVQYARAPV ILLVVGNILN IVLDVWLVMG LHMNVQGAAL ATVIAEYATL LIGLLMVRKI LKLRGISGEM LKTAWRGNFR RLLALNRDIM LRSLLLQLCF GAITVLGARL GSDIIAVNAV LMTLLTFTAY ALDGFAYAVE AHSGQAYGAR DGSQLLDVWR AACRQSGIVA LLFSVVYLLA GEHIIALLTS LTQIQQLADR YLIWQVILPL VGVWCYLLDG MFIGATRAAE MRNSMAVAAA GFALTLLTLP WLGNHALWLA LTVFLALRGL SLAAIWRRHW RNGTWFAAT
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