Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E4476 |
Symbol | rpoC |
ID | 6271357 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 4185429 |
End bp | 4189652 |
Gene Length | 4224 bp |
Protein Length | 1407 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641728270 |
Product | DNA-directed RNA polymerase subunit beta' |
Protein accession | YP_001882673 |
Protein GI | 187731809 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAAGATT TATTAAAGTT TCTGAAAGCG CAGACTAAAA CCGAAGAGTT TGATGCGATC AAAATTGCTC TGGCTTCGCC AGACATGATC CGTTCATGGT CTTTCGGTGA AGTTAAAAAG CCGGAAACCA TCAACTACCG TACGTTCAAA CCAGAACGTG ACGGCCTTTT CTGCGCCCGT ATCTTTGGGC CGGTAAAAGA TTACGAGTGC CTGTGCGGTA AGTACAAGCG CCTGAAACAC CGTGGCGTCA TCTGTGAGAA GTGCGGCGTT GAAGTGACCC AGACTAAAGT ACGCCGTGAG CGTATGGGCC ACATCGAACT GGCTTCCCCG ACTGCGCATA TCTGGTTCCT GAAATCGCTG CCGTCCCGTA TCGGTCTGCT GCTCGATATG CCGCTGCGCG ATATCGAACG CGTACTGTAC TTTGAATCCT ATGTGGTTAT CGAAGGCGGT ATGACCAACC TGGAACGTCA GCAGATCCTG ACTGAAGAGC AGTATCTGGA CGCGCTGGAA GAGTTCGGTG ACGAATTCGA CGCGAAGATG GGTGCGGAAG CAATCCAGGC TCTGCTGAAG AGCATGGATC TGGAGCAAGA GTGCGAACAG CTGCGTGAAG AGCTGAACGA AACCAACTCC GAAACCAAGC GTAAAAAGCT GACCAAGCGT ATCAAACTGC TGGAAGCGTT CGTTCAGTCT GGTAACAAAC CAGAGTGGAT GATCCTGACC GTTCTGCCGG TACTGCCGCC AGATCTGCGT CCGCTGGTTC CGCTGGATGG TGGTCGTTTC GCGACTTCTG ACCTGAACGA TCTGTATCGT CGCGTCATTA ACCGTAACAA CCGTCTGAAA CGTCTGCTGG ATCTGGCTGC GCCGGACATC ATCGTACGTA ACGAAAAACG TATGCTGCAG GAAGCGGTAG ACGCCCTGCT GGATAACGGT CGTCGCGGTC GTGCGATCAC CGGTTCTAAC AAGCGTCCTC TGAAATCTTT GGCCGACATG ATCAAAGGTA AACAGGGTCG TTTCCGTCAG AACCTGCTCG GTAAGCGTGT TGACTACTCC GGTCGTTCTG TAATCACCGT AGGTCCATAC CTGCGTCTGC ATCAGTGCGG TCTGCCGAAG AAAATGGCGC TGGAGCTGTT CAAACCGTTC ATCTACGGCA AGCTGGAACT GCGTGGTCTT GCTACCACCA TTAAAGCTGC GAAGAAAATG GTTGAGCGCG AAGAAGCTGT CGTTTGGGAT ATCCTGGACG AAGTTATCCG CGAACACCCG GTACTGCTGA ACCGTGCACC GACTCTGCAC CGTCTGGGTA TCCAGGCATT TGAACCGGTA CTGATCGAAG GTAAAGCTAT CCAGCTGCAC CCGCTGGTTT GTGCGGCATA TAACGCCGAC TTCGATGGTG ACCAGATGGC TGTTCACGTA CCGCTGACGC TGGAAGCCCA GCTGGAAGCG CGTGCGCTGA TGATGTCTAC CAACAACATC CTGTCCCCGG CGAACGGCGA ACCAATCATC GTTCCGTCTC AGGACGTTGT TCTGGGTCTG TACTATATGA CCCGTGACTG TGTTAACGCC AAAGGCGAAG GCATGGTGCT GACTGGCCCG AAAGAAGCAG AACGTCTGTA TCGCTCTGGT CTGGCTTCTC TGCATGCGCG CGTTAAAGTG CGTATCACCG AGTATGAAAA AGATGCAAAC GGTGAATTAG TAGCGAAAAC CAGCCTGAAA GACACGACTG TTGGCCGTGC CATTCTGTGG ATGATTGTAC CGAAAGGTCT GCCTTACTCC ATCGTCAACC AGGCGCTGGG TAAAAAAGCA ATCTCCAAAA TGCTGAACAC CTGCTACCGC ATTCTCGGTC TGAAACCGAC CGTTATTTTT GCGGACCAGA TCATGTACAC CGGCTTCGCC TATGCAGCGC GTTCTGGTGC ATCTGTTGGC ATCGATGACA TGGTCATCCC GGAGAAGAAA CACGAAATCA TCTCCGAGGC AGAAGCAGAA GTTGCTGAAA TTCAGGAGCA GTTCCAGTCT GGTCTGGTAA CTGCGGGCGA ACGCTACAAC AAAGTTATCG ATATCTGGGC TGCGGCGAAC GATCGTGTAT CCAAAGCGAT GATGGATAAC CTGCAAACTG AAACCGTGAT TAACCGTGAC GGTCAGGAAG AGAAGCAGGT TTCCTTCAAC AGCATCTACA TGATGGCCGA CTCCGGTGCG CGTGGTTCTG CGGCACAGAT TCGTCAGCTT GCTGGTATGC GTGGTCTGAT GGCGAAGCCG GATGGCTCCA TCATCGAAAC GCCAATCACC GCGAACTTCC GTGAAGGTCT GAACGTACTC CAGTACTTCA TCTCCACCCA CGGTGCTCGT AAAGGTCTGG CGGATACCGC ACTGAAAACT GCAAACTCCG GTTACCTGAC TCGTCGTCTG GTTGACGTGG CGCAGGACCT GGTGGTTACC GAAGACGATT GTGGTACCCA TGAAGGTATC ATGATGACTC CGGTTATCGA AGGTGGTGAT GTTAAAGAGC CGCTGCGCGA TCGCGTACTG GGTCGTGTAA CTGCTGAAGA CGTTCTGAAG CCGGGTACTG CTGATATCCT CGTTCCGCGC AACACGCTGC TGCACGAACA GTGGTGTGAC CTGCTGGAAG AGAACTCTGT CGACGCGGTT AAAGTACGTT CTGTTGTATC TTGTGACACC GACTTTGGTG TATGTGCGTA CTGCTACGGT CGTGACCTGG CGCGTGGCCA CATCATCAAC AAGGGTGAAG CAATCGGTGT TATCGCGGCA CAGTCCATCG GTGAACCGGG TACACAGCTG ACCATGCGTA CGTTCCACAT CGGTGGTGCG GCATCTCGTG CGGCTGCTGA ATCCAGCATC CAGGTGAAAA ACAAAGGTAG CATCAAGCTC AGCAACGTGA AGTCGGTTGT GAACTCCAGC GGTAAACTGG TTATCACTTC CCGTAATACT GAACTGAAAC TGATCGACGA ATTCGGTCGT ACCAAAGAAA GCTACAAAGT ACCTTACGGT GCGGTACTGG CGAAAGGCGA TGGCGAACAG GTTGCTGGCG GCGAAACCGT TGCAAACTGG GACCCGCACA CCATGCCGGT TATCACCGAA GTAAGCGGTT TTGTACGCTT TACTGACATG ATCGACGGTC AGACCATTAC TCGTCAGACA GACGAATTGA CCGGTCTGTC TTCGCTGGTG GTTCTGGATT CCGCAGAACG TACCGCAGGT GGTAAAGATC TGCGTCCGGC ACTGAAAATC GTTGATGCTC AGGGTAACGA CGTTCTGATT CCGGGTACCG ATATGCCTGC GCAGTACTTC CTGCCGGGTA AAGCGATTGT TCAGCTGGAA GATGGCGTAC AGATCAGCTC TGGTGACACC CTGGCGCGTA TTCCGCAGGA ATCCGGCGGT ACCAAGGACA TCACCGGTGG TCTGCCGCGC GTTGCGGACC TGTTCGAAGC ACGTCGTCCG AAAGAGCCGG CAATCCTGGC TGAAATCAGC GGTATCGTTT CCTTCGGTAA AGAAACCAAA GGTAAACGTC GTCTTGTTAT CACCCCGGTA GACGGTAGCG ATCCGTACGA AGAGATGATT CCGAAATGGC GTCAGCTCAA CGTGTTCGAA GGTGAACGTG TAGAACGTGG TGACGTAATT TCCGACGGTC CGGAAGCGCC GCACGACATT CTGCGTCTGC GTGGTGTTCA TGCTGTTACT CGTTACATCG TTAACGAAGT ACAGGACGTA TACCGTCTGC AGGGCGTTAA GATTAACGAT AAACACATCG AAGTTATCGT TCGTCAGATG CTGCGTAAAG CTACCATCGT TAACGCGGGC AGCTCCGACT TCCTGGAAGG CGAACAGGTT GAATACTCTC GCGTCAAGAT CGCAAACCGC GAACTGGAAG CGAACGGCAA AGTGGGTGCA ACTTACTCCC GCGATCTGCT GGGTATCACC AAAGCGTCTC TGGCAACCGA GTCCTTCATC TCCGCGGCAT CGTTCCAGGA GACCACTCGC GTGCTGACCG AAGCAGCCGT TGCGGGCAAA CGCGACGAAC TGCGCGGCCT GAAAGAGAAC GTTATCGTGG GTCGTCTGAT CCCGGCAGGT ACCGGTTACG CGTACCACCA GGATCGTATG CGTCGCCGTG CTGCGGGTGA AGCTCCGGCT GCACCGCAGG TGACTGCAGA AGACGCATCT GCCAGCCTGG CAGAACTGCT GAACGCAGGT CTGGGCGGTT CTGATAACGA GTAA
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Protein sequence | MKDLLKFLKA QTKTEEFDAI KIALASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP TAHIWFLKSL PSRIGLLLDM PLRDIERVLY FESYVVIEGG MTNLERQQIL TEEQYLDALE EFGDEFDAKM GAEAIQALLK SMDLEQECEQ LREELNETNS ETKRKKLTKR IKLLEAFVQS GNKPEWMILT VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY LRLHQCGLPK KMALELFKPF IYGKLELRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRDCVNA KGEGMVLTGP KEAERLYRSG LASLHARVKV RITEYEKDAN GELVAKTSLK DTTVGRAILW MIVPKGLPYS IVNQALGKKA ISKMLNTCYR ILGLKPTVIF ADQIMYTGFA YAARSGASVG IDDMVIPEKK HEIISEAEAE VAEIQEQFQS GLVTAGERYN KVIDIWAAAN DRVSKAMMDN LQTETVINRD GQEEKQVSFN SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR KGLADTALKT ANSGYLTRRL VDVAQDLVVT EDDCGTHEGI MMTPVIEGGD VKEPLRDRVL GRVTAEDVLK PGTADILVPR NTLLHEQWCD LLEENSVDAV KVRSVVSCDT DFGVCAYCYG RDLARGHIIN KGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRAAAESSI QVKNKGSIKL SNVKSVVNSS GKLVITSRNT ELKLIDEFGR TKESYKVPYG AVLAKGDGEQ VAGGETVANW DPHTMPVITE VSGFVRFTDM IDGQTITRQT DELTGLSSLV VLDSAERTAG GKDLRPALKI VDAQGNDVLI PGTDMPAQYF LPGKAIVQLE DGVQISSGDT LARIPQESGG TKDITGGLPR VADLFEARRP KEPAILAEIS GIVSFGKETK GKRRLVITPV DGSDPYEEMI PKWRQLNVFE GERVERGDVI SDGPEAPHDI LRLRGVHAVT RYIVNEVQDV YRLQGVKIND KHIEVIVRQM LRKATIVNAG SSDFLEGEQV EYSRVKIANR ELEANGKVGA TYSRDLLGIT KASLATESFI SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGYAYHQDRM RRRAAGEAPA APQVTAEDAS ASLAELLNAG LGGSDNE
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