| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4269 |
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| Symbol | dapF |
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| ID | 6271374 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | + |
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| Start bp | 3991569 |
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| End bp | 3992393 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641728083 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001882503 |
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| Protein GI | 187734112 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAGTTCT CGAAAATGCA TGGCCTTGGC AACGATTTTA TGGTCGTCGA CGCGGTAACG
CAGAATGTCT TTTTTTCACC GGAGCTGATT CGTCGGCTGG CGGATCGGCA CCTGGGGGTA
GGGTTTGACC AGCTGCTGGT GATTGAGCCG CCGTATGATC CTGAACTGGA TTTTCACTAT
CGCATTTTCA ATGCTGATGG CAGTGAAGTG GCGCAGTGCG GCAACGGTGC GCGCTGCTTT
GCCCGTTTTG TGCGCCTGAA AGGGCTGACC AATAAGCGCG ATATCCGCGT CAGCACCGCC
AACGGGCGGA TGGTTCTGAC CGTCACCGAT GATGATCTGG TCCGCGTAAA TATGGGCGAA
CCCAACTTCG AACCTTCCGC TGTGCCGTTT CGCGCTAACA AAGCGGAAAA GACCTATATT
ATGCGCGCCG CCGAGCAGAC AATCTTATGC GGCGTGGTGT CGATAGGAAA TCCGCATTGC
GTGATTCAGG TCGATGATGT CGATACCGCG GCGGTAGAAA CGCTTGGTCC TGTTCTGGAA
AGCCACGAGC GTTTTCCGGA GCGCGCCAAT ATCGGTTTTA TGCAAGTGGT TAAGCGCGAG
CATATTCGTT TACGCGTTTA TGAGCGTGGG GCAGGAGAAA CCCAGGCCTG CGGCAGCGGC
GCGTGTGCGG CGGTTGCAGT AGGGATTCAG CAAGGTTTGC TGGCCGAAGA AGTACGCGTG
GAACTCCCCG GCGGTCGTCT TGATATCGCC TGGAAAGGTC CGGGTCACCC GTTATATATG
ACTGGCCCGG CGGTACATGT CTATGACGGA TTTATTCATC TATGA
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| Protein sequence | MQFSKMHGLG NDFMVVDAVT QNVFFSPELI RRLADRHLGV GFDQLLVIEP PYDPELDFHY
RIFNADGSEV AQCGNGARCF ARFVRLKGLT NKRDIRVSTA NGRMVLTVTD DDLVRVNMGE
PNFEPSAVPF RANKAEKTYI MRAAEQTILC GVVSIGNPHC VIQVDDVDTA AVETLGPVLE
SHERFPERAN IGFMQVVKRE HIRLRVYERG AGETQACGSG ACAAVAVGIQ QGLLAEEVRV
ELPGGRLDIA WKGPGHPLYM TGPAVHVYDG FIHL
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