| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4199 |
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| Symbol | lpfD |
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| ID | 6269605 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | + |
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| Start bp | 3925123 |
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| End bp | 3926196 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 641728019 |
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| Product | long polar fimbrial operon protein LpfD |
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| Protein accession | YP_001882440 |
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| Protein GI | 187731851 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 53 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAGT ATATCAAACA GTGGTGCTTT GCTGTGTTTA TGCTCTCGTT AAGTAGTGTA
GCACTTGCAG CTCCTAAAGG TATCTGTACC CCTGATAATG GCGTATTTCA CAGTACGCTT
GATTTCTCGG GATATCTTAT TACCGCGAAC GAAAATAAGG TTGGAACGAC ATTTAACACC
ACTGTAACTA ATGGATCCTC ATATCCTGGA CGCTGTCATT GTGATACTGG TAACGTAGGA
GAATTCCCCT ATATCTATTA TACGTCAAAA ATAAACCAGG CATTAACTTA TGCTGGGGTT
CACTCTAATA TTAATTATTA TGATCTTAAT CCGAACCTTG ATGTTGGGAT TGCTATAGAT
ATTCTTGGGG TTGGGTATGT GAATGCACCT TTTGAATATC ATGCTAACAA CCCGTCTGGT
AATACAAAGT ACAATTGCAA CCGCATTGAA CCTTTAAGTA TATCTAGTGG GGCTAAAGCG
ATAGTATATT TTTATATCAA GAAGACATTT GCAGGAAAAT TGATTATTCC TGAAACAAAG
ATAGTGACAT TGTATGGAAC AATTAGCCGT GACACCCCGG TGGATTACTC ACAGCCGATG
GCTGATGTTT ATATTCGGGG CGATATTACA GCTCCGCAAA GTTGCGAAAT AAATAATTTA
CAGCCAGTTT ATTTTGATTT TAAAGAAATA CCAGCTGCAG ATTTTTCATC TGTTGTTGGA
AGTGCGGTAA CAACACATAA AATTACTAAA ACGGTCACTA TTGAGTGTGA AAACCTGGGG
ATACTGAATA CCGATGATAT CAGTACGTCT TTTTATGCTA CCGAACCCAA TACGGACAAT
TCAATGGTCG TAACTTCAAA CTCTAACGTG GGGATAAAAA TTTACGACAA AAATAATAAG
GAAATCAAAG TGAACGGTGG TGAGTTGCCA ACAGACATGG GTAAATCAAC AGTGTATGGT
GAAAAATCAG GTAGTGTAAC TTTTTCAGCT GCTCCTGCGA GCCTTACTGG AGCTCGCCCA
GCCCCGGGGC AATTTACTGC AACAGCGACG ATAACTGTTG AGATTGTGCG CTAA
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| Protein sequence | MNKYIKQWCF AVFMLSLSSV ALAAPKGICT PDNGVFHSTL DFSGYLITAN ENKVGTTFNT
TVTNGSSYPG RCHCDTGNVG EFPYIYYTSK INQALTYAGV HSNINYYDLN PNLDVGIAID
ILGVGYVNAP FEYHANNPSG NTKYNCNRIE PLSISSGAKA IVYFYIKKTF AGKLIIPETK
IVTLYGTISR DTPVDYSQPM ADVYIRGDIT APQSCEINNL QPVYFDFKEI PAADFSSVVG
SAVTTHKITK TVTIECENLG ILNTDDISTS FYATEPNTDN SMVVTSNSNV GIKIYDKNNK
EIKVNGGELP TDMGKSTVYG EKSGSVTFSA APASLTGARP APGQFTATAT ITVEIVR
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