| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E3922 |
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| Symbol | treF |
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| ID | 6269070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | + |
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| Start bp | 3648945 |
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| End bp | 3650594 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641727775 |
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| Product | trehalase |
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| Protein accession | YP_001882208 |
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| Protein GI | 187730946 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1626] Neutral trehalase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.812338 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCAATC AGAAAATTCA AAACCCTAAT CCAGACGAAC TGATGATCGA AGTCGATCTC
TGCTATGAAC TGGACCCGTA TGAATTAAAA CTGGATGAGA TGATCGAGGC AGAACCGGAA
CCCGAGATGA TTGAAGGGCT GCCCGCCTCT GATGCGCTGA CGCCTGCCGA TCGCTATCTC
GAACTGTTCG AGCATGTTCA GTCGGCGAAA ATTTTCCCCG ACAGTAAAAC CTTTCCCGAC
TGCGCACCCA AAATGGACCC GCTGGATATT TTAATCCGCT ACCGTAAAGT GCGCCGTCAT
CGTGATTTTG ACTTGCGCAA GTTTGTTGAA AATCACTTCT GGCTGCCGGA GGTCTACTCC
AGCGAGTATG TATCGGACCC GCAAAATTCC CTGAAAGAGC ATATCGACCA GCTGTGGCCG
GTGCTAACCC GCGAACCACA GGATCACATT CCGTGGTCTT CTCTGCTGGC GCTACCGCAG
TCATATATTG TCCCGGGCGG CCGTTTTAGC GAAACCTACT ATTGGGATTC CTATTTCACC
ATGCTGGGGC TGGCGGAAAG TGGTCGGGAA GATTTGCTGA AATGCATGGC CGATAACTTC
GCCTGGATGA TCGAAAACTA CGGTCACATC CCCAACGGCA ACCGCACCTA TTATTTGAGC
CGCTCGCAAC CACCGGTTTT TGCGCTGATG GTGGAGTTGT TTGAAGAAGA TGGTGTACGC
GGTGCGCGCC GCTATCTCGA CCACCTGAAA ATGGAATATG CCTTCTGGAT GGACGGTGCA
GAATCGTTGA TCCCTAATCA GGCCTATCGC CATGTTGTGC GGATGCCGGA CGGATCGCTG
CTCAACCGTT ACTGGGACGA TCGCGACACG CCGCGTGACG AATCCTGGCT TGAGGACGTT
GAAACCGCGA AACATTCTGG TCGCCCGCCC AACGAGGTGT ACCGCGATTT ACGAGCGGGG
GCGGCCTCCG GTTGGGATTA CTCTTCCCGT TGGCTGCGTG ATACTGGTCG TCTGGCGAGT
ATTCGTACCA CCCAGTTCAT CCCCATCGAT CTGAATGCCT TCCTGTTTAA ACTGGAGAGC
GCCATCGCCA ACATCTCGGC GCTGAAAGGC GAGAAAGAGA CAGAAGCACT GTTCCGCCAG
AAGGCCAGTG CCCGTCGCGA TGCGGTAAAC CGTTACCTCT GGGATGATGA AAACGGCATC
TACCGCGATT ACGACTGGCG ACGCGAACAA CTGGCGCTGT TTTCCGCTGC CGCCATTGTG
CCACTCTATG TCGGTATGGC GAACCATGAA CAGGCCGATC GTCTGGCAAA TGCCGTGCGC
AGTCGGTTAC TGACACCTGG CGGGATTCTG GCAAGCGAGT ACGAAACCGG TGAACAGTGG
GATAAACCCA ACGGCTGGGC ACCGTTACAA TGGATGGCGA TTCAGGGATT TAAAATGTAC
GGCGATGACC TTCTGGGTGA TGAAATCGCG CGAAGCTGGC TGAAGACGGT GAATCAGTTC
TATCTGGAAC AGCACAAACT GATCGAAAAA TACCATATTG CCGATGGTGT TCCACGCGAA
GGCGGCGGTG GCGAGTATCC GTTGCAGGAT GGGTTTGGCT GGACTAACGG TGTGGTACGC
CGTTTAATTG GTTTGTACGG CGAACCATAA
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| Protein sequence | MLNQKIQNPN PDELMIEVDL CYELDPYELK LDEMIEAEPE PEMIEGLPAS DALTPADRYL
ELFEHVQSAK IFPDSKTFPD CAPKMDPLDI LIRYRKVRRH RDFDLRKFVE NHFWLPEVYS
SEYVSDPQNS LKEHIDQLWP VLTREPQDHI PWSSLLALPQ SYIVPGGRFS ETYYWDSYFT
MLGLAESGRE DLLKCMADNF AWMIENYGHI PNGNRTYYLS RSQPPVFALM VELFEEDGVR
GARRYLDHLK MEYAFWMDGA ESLIPNQAYR HVVRMPDGSL LNRYWDDRDT PRDESWLEDV
ETAKHSGRPP NEVYRDLRAG AASGWDYSSR WLRDTGRLAS IRTTQFIPID LNAFLFKLES
AIANISALKG EKETEALFRQ KASARRDAVN RYLWDDENGI YRDYDWRREQ LALFSAAAIV
PLYVGMANHE QADRLANAVR SRLLTPGGIL ASEYETGEQW DKPNGWAPLQ WMAIQGFKMY
GDDLLGDEIA RSWLKTVNQF YLEQHKLIEK YHIADGVPRE GGGGEYPLQD GFGWTNGVVR
RLIGLYGEP
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